Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005006.1 Hibiscus syriacus cultivar Beakdansim tig00011233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144286

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11302--11334
15
2.2
15
89
10
50
69
3
0
27
1.03
12667--12712
3
15.7
3
86
4
67
60
2
0
36
1.09
21220--21318
11
8.1
12
68
23
64
75
0
19
5
0.98
21230--21318
6
15.0
6
75
13
69
76
0
17
5
0.98
21220--21318
22
4.3
22
73
16
83
75
0
19
5
0.98
21230--21308
27
2.9
26
83
14
106
77
0
16
6
0.97
22490--22526
13
2.8
13
91
0
65
27
37
0
35
1.57
22665--22979
160
2.0
159
83
5
395
35
16
20
27
1.94
23157--23225
14
5.1
14
72
13
56
26
1
1
71
1.03
23162--23224
33
1.9
33
83
6
83
28
1
0
69
0.97
23665--23703
3
12.7
3
84
15
53
33
0
2
64
1.08
30543--30633
30
3.0
31
80
7
98
32
14
13
39
1.84
30674--30732
29
2.0
30
86
3
84
20
16
15
47
1.83
30751--30856
43
2.6
40
75
10
99
24
33
17
23
1.96
31160--31220
3
20.0
3
84
15
81
31
0
3
65
1.09
32994--33037
15
2.9
15
89
0
70
50
4
20
25
1.67
37258--37528
46
5.9
45
87
4
382
31
21
7
39
1.81
37268--37528
139
1.9
138
89
2
407
31
22
7
38
1.82
37258--37528
94
3.0
90
87
4
382
31
21
7
39
1.81
43795--44085
80
3.6
80
86
2
388
22
19
26
31
1.97
49989--50033
18
2.4
18
81
3
54
24
13
0
62
1.31
49997--50050
22
2.3
24
84
6
67
31
9
0
59
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64370--64419
24
2.1
24
88
7
75
58
14
2
26
1.47
69668--69801
69
1.9
69
95
3
243
29
12
21
36
1.90
81289--81380
8
10.2
9
70
24
61
79
0
19
1
0.80
81289--81381
5
17.4
5
76
16
80
79
0
19
1
0.79
81285--81395
22
5.0
21
83
14
111
78
0
19
1
0.84
81314--81395
28
3.0
27
85
7
62
80
0
17
2
0.82
81292--81397
11
9.5
11
77
5
88
79
0
18
1
0.83
87387--87529
39
3.7
39
83
1
171
32
25
25
16
1.96
88550--88598
18
2.7
18
96
0
89
26
22
28
22
1.99
93555--93710
39
4.0
39
85
0
186
32
18
28
20
1.96
119113--119149
14
2.6
14
95
0
65
37
18
27
16
1.92
123999--124265
36
7.3
36
73
11
186
32
17
11
37
1.87
124000--124265
74
3.6
73
84
5
322
32
18
11
37
1.86
124353--124475
36
3.4
35
75
5
111
31
19
12
36
1.89
126763--126795
8
4.2
8
84
7
50
36
3
12
48
1.56
126846--126875
15
2.0
15
93
0
51
36
0
6
56
1.26
135117--136077
337
2.9
333
78
9
895
30
20
14
33
1.93
135117--136077
167
5.7
169
77
6
823
30
20
14
33
1.93
137087--137133
21
2.3
21
81
3
51
10
29
6
53
1.60
138588--139317
166
4.4
165
75
4
563
35
13
19
30
1.91
138699--139313
334
1.8
331
80
4
745
34
14
19
32
1.91
139653--139690
2
19.5
2
89
5
60
52
0
2
44
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
140287--140393
26
4.3
26
74
20
111
28
19
12
40
1.87

Tables:   1

The End!