genome.fa.s5008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005008.1 Hibiscus syriacus cultivar Beakdansim tig00011239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79317

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1999--2070	24	3.0	23	84	6	90	52	15	9	22	1.71
2050--2087	12	3.2	12	78	14	51	55	15	15	13	1.70
5885--5929	2	22.5	2	91	8	74	48	0	2	48	1.13
6073--6133	29	2.1	29	87	6	88	27	18	4	49	1.68
6465--6810	59	5.9	59	88	1	480	34	19	12	33	1.89
10969--11014	22	2.1	22	91	0	74	19	17	23	39	1.92
23246--23497	133	1.9	132	80	2	290	29	21	14	34	1.92
42008--42105	20	4.8	20	77	3	88	36	23	18	21	1.95
41949--42105	41	3.9	41	69	11	117	38	25	17	17	1.92
42092--42262	20	8.6	20	84	5	107	35	26	18	20	1.95
42072--42281	60	3.5	58	80	7	208	37	25	17	20	1.94
42126--42281	20	7.8	20	87	4	174	35	25	17	21	1.95
42092--42281	40	4.8	40	86	5	208	36	25	17	20	1.94
42964--43010	24	2.0	24	87	8	69	25	14	21	38	1.92
43185--43209	12	2.1	12	100	0	50	72	0	28	0	0.86
45489--45757	19	15.4	19	77	18	300	47	18	20	13	1.82
45489--45779	33	8.5	33	79	13	302	46	18	21	13	1.83
45517--45779	52	5.0	52	88	8	410	46	17	22	13	1.83
45489--45779	71	4.2	69	81	14	288	46	18	21	13	1.83
45786--45887	19	5.6	19	84	12	142	14	22	17	45	1.85
45994--46030	14	2.6	14	91	0	65	45	21	0	32	1.52
48011--48067	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47992--48084	33	2.8	33	95	0	168	47	21	20	10	1.80
47955--48089	19	7.6	19	76	16	128	45	23	19	11	1.82
48085--48197	19	6.5	19	74	19	120	7	17	28	46	1.74
48085--48176	33	2.8	33	93	3	150	7	18	28	45	1.76
48115--48213	19	5.4	18	76	12	80	9	18	27	45	1.79
48261--48729	93	5.1	93	99	0	913	46	18	12	21	1.83
50436--50525	14	5.7	14	70	23	63	44	23	23	8	1.81
50428--50542	33	3.5	33	95	0	203	47	20	21	9	1.78
50450--50547	19	5.7	19	68	22	72	45	22	21	10	1.81
50558--50614	14	3.7	14	75	20	60	8	24	22	43	1.81
50572--50660	19	4.9	19	72	15	80	11	23	21	43	1.84
50553--50660	33	3.1	33	88	8	144	10	25	20	44	1.82
50752--50822	33	2.2	33	94	0	124	47	16	23	11	1.79
51205--51398	20	9.6	20	79	5	203	19	20	24	35	1.95
51207--51378	60	2.8	60	84	0	236	20	19	25	34	1.96
51204--51519	60	5.2	60	77	7	230	20	18	24	36	1.95
51365--51521	20	7.8	20	73	7	93	19	17	24	38	1.92
51365--51462	41	2.4	41	77	6	110	21	18	22	37	1.94
66705--66745	17	2.4	17	84	8	57	7	34	0	58	1.26
68002--68101	45	2.2	45	81	8	116	30	20	19	31	1.96
68001--68101	22	4.5	22	81	4	105	30	19	18	30	1.96
72624--72698	3	25.0	3	81	5	89	38	2	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72626--72696	15	4.9	15	86	8	103	39	2	0	57	1.13
73193--73238	21	2.2	21	92	0	74	71	23	4	0	1.03
74423--74483	23	2.6	24	82	12	74	44	3	0	52	1.17

Tables:   1

The End!