Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005009.1 Hibiscus syriacus cultivar Beakdansim tig00011242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77795
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:5655 original size:23 final size:23
Alignment explanation
Indices: 5629--5696 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 23
5619 CTATTGTTAT
5629 TTTTATATTTTAAATTATTATAA
1 TTTTATATTTTAAATTATTATAA
* * * *
5652 TTTTAGAATTCTAAA-AATTATAG
1 TTTTA-TATTTTAAATTATTATAA
* **
5675 TTTTATTTTTTATTTTATTATA
1 TTTTATATTTTAAATTATTATA
5697 TTAAATTATT
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
22 4 0.12
23 22 0.67
24 7 0.21
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (23 bp):
TTTTATATTTTAAATTATTATAA
Found at i:6161 original size:23 final size:25
Alignment explanation
Indices: 6134--6179 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
6124 ATTAAATATA
*
6134 TTAATATG-TTAT-TGAATATTTTC
1 TTAATATGATTATATAAATATTTTC
6157 TTAATATGATTATATAAATATTT
1 TTAATATGATTATATAAATATTT
6180 AAACTTTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 4 0.20
25 8 0.40
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (25 bp):
TTAATATGATTATATAAATATTTTC
Found at i:6480 original size:14 final size:14
Alignment explanation
Indices: 6461--6498 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
6451 CATGTTATTG
6461 TGATTAAAATAATT
1 TGATTAAAATAATT
6475 TGATTAAAATAATT
1 TGATTAAAATAATT
6489 TGATTAAAAT
1 TGATTAAAAT
6499 GTATCTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (14 bp):
TGATTAAAATAATT
Found at i:17318 original size:20 final size:20
Alignment explanation
Indices: 17293--17359 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
17283 GATGAATGTT
17293 GATGTTGTTCAATGGTTATC
1 GATGTTGTTCAATGGTTATC
*
17313 GATGTTGTTTAATGGTTATC
1 GATGTTGTTCAATGGTTATC
*
17333 GATGTTGTTCAATAGTTATC
1 GATGTTGTTCAATGGTTATC
17353 GATGTTG
1 GATGTTG
17360 CATAAATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (20 bp):
GATGTTGTTCAATGGTTATC
Found at i:18291 original size:23 final size:24
Alignment explanation
Indices: 18243--18291 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
18233 CGATTGTAGA
* *
18243 TTGTAAAGGGTTTGGGGTTTTATT
1 TTGTAAAAGGTTTGGGGTTTGATT
*
18267 TTGTAAAAGGTTT-GGGTTTGGTT
1 TTGTAAAAGGTTTGGGGTTTGATT
18290 TT
1 TT
18292 TGGTTTGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (24 bp):
TTGTAAAAGGTTTGGGGTTTGATT
Found at i:19146 original size:42 final size:41
Alignment explanation
Indices: 19048--19147 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 41
19038 GCCCGAAGGT
* * * * *
19048 CTTATGGATGGCCCGAAGAACTTATCATCTTGTTCGAAAGA
1 CTTATAGATGGCCCGAAGAACTTAGCATCATGCTAGAAAGA
* * *
19089 CTTATAAATGACCCGAAGAATTTACGCATCATGCTAGAAAGA
1 CTTATAGATGGCCCGAAGAACTTA-GCATCATGCTAGAAAGA
19131 CTTACT-GATGGCCCGAA
1 CTTA-TAGATGGCCCGAA
19148 TGACTTACTC
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
41 20 0.43
42 26 0.55
43 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (41 bp):
CTTATAGATGGCCCGAAGAACTTAGCATCATGCTAGAAAGA
Found at i:19346 original size:41 final size:41
Alignment explanation
Indices: 19289--19395 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 41
19279 GCCCGAAGGT
* * * *
19289 CTTATGGATGGCCCGAAGGACTTATA-ATCTTTCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTTA-ACATCATACTCGAAACA
* *
19330 CTTATAGATGACCCGAAGGATTTAAGCATCATACTCGAAACA
1 CTTATAGATGGCCCGAAGGACTTAA-CATCATACTCGAAACA
*
19372 CTTATTGATGGCCCGAAGGACTTA
1 CTTATAGATGGCCCGAAGGACTTA
19396 CTCAGTAAGA
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
40 1 0.02
41 21 0.38
42 33 0.60
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (41 bp):
CTTATAGATGGCCCGAAGGACTTAACATCATACTCGAAACA
Found at i:19361 original size:241 final size:241
Alignment explanation
Indices: 18737--19665 Score: 1339
Period size: 241 Copynumber: 3.9 Consensus size: 241
18727 CTTCAAAAAA
* ** * * *
18737 TATTTAAATGAGAAACTTTTGAAA-CATTTTCTCGTTTTCCGAAAATCATGTGAAAACATCTTGC
1 TATTTAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGC
* * * **
18801 CCGAAGGTCTTATGGAT-GCCCGAAGGGCTTATCATCTTGCTCGAAAGACTTACAGATAACTGGA
66 CCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCCGA
* ** * ** * * * *
18865 AGCATTTACTCATCATGCTCGAAAGACTTACTGACGGATCTAAAGACTTACGCATTAAGAAACTT
131 AGAATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTCAGTAAGAAACTT
* *
18930 TGGGAA-TCACTTTCTTACTTTTCAAGAAAAATCAGTTTTTAGAAAA
196 T-GGAATTCACTTTCTTACTTTTCAAGAAAAATCAATTTTTAGAAAT
* * ** *
18976 TATTTAAAT-AGAAACTTTTGAAATTG-TTTCCTTTTTTTTCGAAAATCATGTGAAAGCATCCTG
1 TATTTAAATGAGAAACTTTGGAAATCGCTTT-CTCATTTTTCGAAAATCATGTGAAAACATCCTG
* * *
19039 CCCGAAGGTCTTATGGATGGCCCGAAGAACTTATCATCTTGTTCGAAAGACTTATAAATGACCCG
65 CCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCCG
* * *
19104 AAGAATTTACGCATCATGCTAGAAAGACTTACTGATGGCCCGAATGACTTACTCAGTAAGAAACT
130 AAGAATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTCAGTAAGAAACT
19169 TTGGAATTCACTTTCTTACTTTTCAAGAAAAATCAATTTTTAGAAAT
195 TTGGAATTCACTTTCTTACTTTTCAAGAAAAATCAATTTTTAGAAAT
*
19216 TATTTAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTTGAAAATCATGTGAAAACATCCTGC
1 TATTTAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGC
* *
19281 CCGAAGGTCTTATGGATGGCCCGAAGGACTTATAATCTTTCTCGAAAGACTTATAGATGACCCGA
66 CCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCCGA
* * * *
19346 AGGATTTAAGCATCATACTCGAAACACTTATTGATGGCCCGAAGGACTTACTCAGTAAGAAACTT
131 AGAATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTCAGTAAGAAACTT
19411 TGGAATTCACTTTCTTACTTTTCAAGAAAAATCAATTTTTAGAAAT
196 TGGAATTCACTTTCTTACTTTTCAAGAAAAATCAATTTTTAGAAAT
*
19457 TATTTATATGAGAAACTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGC
1 TATTTAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGC
* *
19522 CCGAAGGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCCCGAAAGACTTATAGATGACCCGA
66 CCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCCGA
* ** * * *
19587 AGAATTTAAGCATGATGCTCGAAAGACTTGTTGATGGCTCGAAGGAC-TACTTAGCAAGAAACTT
131 AGAATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTCAGTAAGAAACTT
*
19651 TGGAAATCACTTTCT
196 TGGAATTCACTTTCT
19666 CTTTTTTCAA
Statistics
Matches: 624, Mismatches: 60, Indels: 11
0.90 0.09 0.02
Matches are distributed among these distances:
238 17 0.03
239 59 0.09
240 171 0.27
241 374 0.60
242 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (241 bp):
TATTTAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGC
CCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCCGA
AGAATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTCAGTAAGAAACTT
TGGAATTCACTTTCTTACTTTTCAAGAAAAATCAATTTTTAGAAAT
Found at i:19553 original size:20 final size:19
Alignment explanation
Indices: 19520--19587 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
19510 AAAACATCCT
* *
19520 GCCCGAAGGTCTTATGGATG
1 GCCCGAAAGACTTAT-GATG
* *
19540 GCCCGAAAGACTTATCATCTT
1 GCCCGAAAGACTTATGA--TG
19561 GCCCGAAAGACTTATAGATG
1 GCCCGAAAGACTTAT-GATG
*
19581 ACCCGAA
1 GCCCGAA
19588 GAATTTAAGC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
19 1 0.03
20 20 0.53
21 16 0.42
22 1 0.03
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22
Consensus pattern (19 bp):
GCCCGAAAGACTTATGATG
Found at i:19823 original size:176 final size:176
Alignment explanation
Indices: 19467--19824 Score: 497
Period size: 176 Copynumber: 2.0 Consensus size: 176
19457 TATTTATATG
* *
19467 AGAAACTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCGAAGGTCT
1 AGAAACTTTGGAAATCACTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCCCGAAGGTCT
* *
19532 TATGGATGGCCCGAAAGACTTATCATCTTGCCCGAAAGACTTATAGATGACCCGAAGAATTTAAG
66 TAAGGATGACCCGAAAGACTTATCATCTTGCCCGAAAGACTTATAGATGACCCGAAGAATTTAAG
* * * ** * * *
19597 CATGATGCTCGAAAGACTTGTTGATGGCTCGAAGGACTACTTAGCA
131 CATCATGATCGAAACACTTACTGATGGCCCAAAGGACTACTAAGCA
*
19643 AGAAACTTTGGAAATCACTTTCTCTTTTTTCAAAAATCAT-TCGAAAACATCCAT-CCCGAAGGT
1 AGAAACTTTGGAAATCACTTTCTCATTTTTCAAAAATCATGT-GAAAACATCC-TGCCCGAAGGT
* ** *
19706 CTTAAGGATGACCCGAAA-ACTTTTCATCTTGCTTGAAAGACTTATAGATGACCCGAAGGATTTA
64 CTTAAGGATGACCCGAAAGACTTATCATCTTGCCCGAAAGACTTATAGATGACCCGAAGAATTTA
* *
19770 AGCATCATGATCGAAACATTTACTGATGGCCCAAAGGACCTACTAATCA
129 AGCATCATGATCGAAACACTTACTGATGGCCCAAAGGA-CTACTAAGCA
19819 AGAAAC
1 AGAAAC
19825 CCTTAAAAAT
Statistics
Matches: 160, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
175 73 0.46
176 86 0.54
177 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (176 bp):
AGAAACTTTGGAAATCACTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCCCGAAGGTCT
TAAGGATGACCCGAAAGACTTATCATCTTGCCCGAAAGACTTATAGATGACCCGAAGAATTTAAG
CATCATGATCGAAACACTTACTGATGGCCCAAAGGACTACTAAGCA
Found at i:20011 original size:56 final size:56
Alignment explanation
Indices: 19888--20065 Score: 225
Period size: 56 Copynumber: 3.1 Consensus size: 56
19878 AAACCCCCCT
* * * * * *
19888 AAAATTAGGCTTATCTTCTTTAAAAGTTCTTTGGAAACAATCATCAATAAACCCCTC
1 AAAATCAGGCTTATCTTCTTTAAAA-TTCATTGGAAATAATCATCAAGAAACCCTTG
* *
19945 AAAATCAGGCTTAGT-TTCTTTAAAATTCATTAGAAATAATAAT-AAGGAAACCCTTG
1 AAAATCAGGCTTA-TCTTCTTTAAAATTCATTGGAAATAATCATCAA-GAAACCCTTG
*
20001 AAAATCAGGCTTATCTTCTTTAAAATTCATGGGAAATAATCATCAAGAAACCCTTG
1 AAAATCAGGCTTATCTTCTTTAAAATTCATTGGAAATAATCATCAAGAAACCCTTG
20057 AAATATCAG
1 AAA-ATCAG
20066 ATTTGGATTC
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
55 3 0.03
56 72 0.69
57 29 0.28
58 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (56 bp):
AAAATCAGGCTTATCTTCTTTAAAATTCATTGGAAATAATCATCAAGAAACCCTTG
Found at i:20158 original size:54 final size:54
Alignment explanation
Indices: 19926--20184 Score: 161
Period size: 54 Copynumber: 4.7 Consensus size: 54
19916 CTTTGGAAAC
* ** * * *
19926 AATCATCAATAAACCCCTCAAAATCAGGCTTAGTTTCTTT-AAAATTCA-TTAGA
1 AATCATCAAGAAACCATTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTA-A
* * * * * **
19979 AATAATAATAAGGAAACCCTTGAAAATCAGGCTTA-TCTTCTTT-AAAATTCATGGGAAA
1 AATCAT--CAA-GAAACCATTGAAAATCAGACTTAGT-TTCTTTAAAAACTCAT--TTAA
* * * * * *
20037 TAATCATCAAGAAACCCTTGAAATATCAGATTTGGATTCTCTGAAAACTCATTTAA
1 -AATCATCAAGAAACCATTGAAA-ATCAGACTTAGTTTCTTTAAAAACTCATTTAA
* * * *
20093 AATCGTTAAGAAA-CTTCTGAAAATCATACTTAGTTTCTTTAAAAACTCATTTAAA
1 AATCATCAAGAAACCAT-TGAAAATCAGACTTAGTTTCTTTAAAAACTCATTT-AA
*
20148 AAT-ATCAAGAAACCATTGAAAATCGGACTTAGTTTCT
1 AATCATCAAGAAACCATTGAAAATCAGACTTAGTTTCT
20185 AAAAAATTGC
Statistics
Matches: 161, Mismatches: 31, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
53 5 0.03
54 52 0.32
55 26 0.16
56 49 0.30
57 14 0.09
58 9 0.06
59 6 0.04
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (54 bp):
AATCATCAAGAAACCATTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAA
Found at i:22023 original size:3 final size:3
Alignment explanation
Indices: 22015--22058 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
22005 TGTATAATTT
* *
22015 ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA AAA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
22059 TTATTAACAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:27200 original size:21 final size:22
Alignment explanation
Indices: 27176--27258 Score: 68
Period size: 21 Copynumber: 3.9 Consensus size: 22
27166 TGCATTCGAA
27176 ATGGAGTGCAT-GATGCACTAC
1 ATGGAGTGCATGGATGCACTAC
* *
27197 AT-G-GTGCATCGATACACTA-
1 ATGGAGTGCATGGATGCACTAC
* *
27216 GTGGCAGGTGAATGGATGCACTAC
1 ATGG-A-GTGCATGGATGCACTAC
*
27240 A-GGGGTGCATGGATGCACT
1 ATGGAGTGCATGGATGCACT
27259 TTGACACCCT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
19 7 0.15
20 10 0.21
21 16 0.33
23 15 0.31
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.23
Consensus pattern (22 bp):
ATGGAGTGCATGGATGCACTAC
Found at i:27965 original size:15 final size:15
Alignment explanation
Indices: 27947--28004 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
27937 AAACCTAATT
*
27947 AAAATAAATAATAAA
1 AAAATAAAAAATAAA
* * *
27962 AAAAGAAAAAA-CAC
1 AAAATAAAAAATAAA
27976 AAAATAAAAAATAAA
1 AAAATAAAAAATAAA
*
27991 AAAGTAAAAAATAA
1 AAAATAAAAAATAA
28005 GCATAAACAC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 11 0.32
15 23 0.68
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAATAAAAAATAAA
Found at i:40304 original size:56 final size:56
Alignment explanation
Indices: 40196--40305 Score: 127
Period size: 56 Copynumber: 2.0 Consensus size: 56
40186 ACTTGTACAC
* * * *
40196 TTTATTTTATTTTAATTTTTGCATGATGGTTTGATTGTTTATGTTTTAGTCCTATT
1 TTTATTTCATTTTAATTTTTGCATGATGCTTTGATAGTTCATGTTTTAGTCCTATT
*
40252 TTTATTTCATTTTAA-TTTTGCATGTTGCTTGCATGATAGTTCAT-TTTT-GTCCTA
1 TTTATTTCATTTTAATTTTTGCATGATGCTT---TGATAGTTCATGTTTTAGTCCTA
40306 ATTAATTTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
55 13 0.28
56 20 0.43
57 4 0.09
58 9 0.20
ACGTcount: A:0.18, C:0.09, G:0.14, T:0.59
Consensus pattern (56 bp):
TTTATTTCATTTTAATTTTTGCATGATGCTTTGATAGTTCATGTTTTAGTCCTATT
Found at i:42824 original size:3 final size:3
Alignment explanation
Indices: 42816--42854 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
42806 ATTGCCTTAC
42816 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
42855 TTAAAAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:42977 original size:6 final size:6
Alignment explanation
Indices: 42962--42991 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
42952 ACCTAAACAT
42962 CTAA-C CTAACC CTAACC CTAACC CTAACC C
1 CTAACC CTAACC CTAACC CTAACC CTAACC C
42992 CTCATCTCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.33, C:0.50, G:0.00, T:0.17
Consensus pattern (6 bp):
CTAACC
Found at i:50139 original size:24 final size:24
Alignment explanation
Indices: 50104--50159 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
50094 TACCACACTC
* ** *
50104 GAAAAA-AGAAAAAAATTAAAAAT
1 GAAAAAGAAAAAAAAAGGAAAAAG
50127 GAAAAAGAAAAAAAAAGGAAAAAG
1 GAAAAAGAAAAAAAAAGGAAAAAG
50151 GAAAAAGAA
1 GAAAAAGAA
50160 TGAAGGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (24 bp):
GAAAAAGAAAAAAAAAGGAAAAAG
Found at i:50141 original size:17 final size:17
Alignment explanation
Indices: 50121--50163 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
50111 GAAAAAAATT
50121 AAAAATGAAAAAGAAAA
1 AAAAATGAAAAAGAAAA
* *
50138 AAAAAGGAAAAAGGAAA
1 AAAAATGAAAAAGAAAA
*
50155 AAGAATGAA
1 AAAAATGAA
50164 GGAAATGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.05
Consensus pattern (17 bp):
AAAAATGAAAAAGAAAA
Found at i:50880 original size:29 final size:29
Alignment explanation
Indices: 50838--50917 Score: 115
Period size: 29 Copynumber: 2.8 Consensus size: 29
50828 GAGATTTTAG
*
50838 AAGTTGTTTAGGCTTATTCTACATCTTAA
1 AAGTTGTTGAGGCTTATTCTACATCTTAA
* *
50867 AAGTTGTTGAGGCTTATTTTACATCTTAG
1 AAGTTGTTGAGGCTTATTCTACATCTTAA
* *
50896 CAGTTGTTGAGGCTTTTTCTAC
1 AAGTTGTTGAGGCTTATTCTAC
50918 CTCAAATAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.45
Consensus pattern (29 bp):
AAGTTGTTGAGGCTTATTCTACATCTTAA
Found at i:52296 original size:233 final size:232
Alignment explanation
Indices: 51888--52453 Score: 756
Period size: 233 Copynumber: 2.4 Consensus size: 232
51878 TTTATAAGTT
* * * * * * ** *
51888 AAAAAATGAGAAAAGTTTTTCGTTTAAATATGAAAATGGAAATTGCTGAAAAGTAAGGAAAGTTT
1 AAAAAATGAGAAAA-ATTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAAGTTT
* * *
51953 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCCTCGGGCCATCAGTAAGTCTTTCGAGCAT
65 CTTACCTAGTAAACTATTTTCAAAGTTGGTAAGTCCCTCGGGCCATCAGTAAGTCTTCCGAGCAT
* * *
52018 GATGCTTAAATCCTTCGGGTTATCTGTAAGTCTTTCAATCAAGATGATAAGTCCTCCGGGCAATC
130 GATGCTTAAATCCTTCGGATCATCTGTAAGTCTTTCAAGCAAGATGATAAGTCCTCCGGGCAATC
* * * *
52083 CATAAGACCTTTGGGTATGATGTTTTCATATGTCTCTA
195 CATAAAACCTTTGGGCATGATGTTTTCACATGGCTCTA
* *** * * *
52121 AAAAAATGATAAGGTTTCTCATTTAAATCTGAAAATTTAAATTTTTTTAAAAGTAAGAAAAGTTT
1 AAAAAATGAGAAAAATTCTCATTTAAATCTAAAAATTGAAA-TTTTTGAAAAGTAAGAAAAGTTT
* ** *
52186 CTTGCCTAGTAAACTATTTTCAAAGTTGGTAAGTCTTTCGGGCCATTAGTAAGTCTTCCGAGCAT
65 CTTACCTAGTAAACTATTTTCAAAGTTGGTAAGTCCCTCGGGCCATCAGTAAGTCTTCCGAGCAT
* * *
52251 GATGCTTAAATCCTTCGGATCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATC
130 GATGCTTAAATCCTTCGGATCATCTGTAAGTCTTTCAAGCAAGATGATAAGTCCTCCGGGCAATC
*
52316 CATAAAACCTTTGGGCATGATGTTTTCACATGGCTCTC
195 CATAAAACCTTTGGGCATGATGTTTTCACATGGCTCTA
* *
52354 AAAAAATGAGAAAAATTCTTATTTAAATTTAAAAATTGAAATTTTTGAAAAGTAAGAAAAGTTTC
1 AAAAAATGAGAAAAATTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAAGTTTC
* *
52419 TTACCTAGTAAACCA-TTTCCAAGATTGGTAAGTCC
66 TTACCTAGTAAACTATTTTCAAAG-TTGGTAAGTCC
52454 TTCAGACTAT
Statistics
Matches: 288, Mismatches: 43, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
231 7 0.02
232 68 0.24
233 213 0.74
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (232 bp):
AAAAAATGAGAAAAATTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAAGTTTC
TTACCTAGTAAACTATTTTCAAAGTTGGTAAGTCCCTCGGGCCATCAGTAAGTCTTCCGAGCATG
ATGCTTAAATCCTTCGGATCATCTGTAAGTCTTTCAAGCAAGATGATAAGTCCTCCGGGCAATCC
ATAAAACCTTTGGGCATGATGTTTTCACATGGCTCTA
Found at i:55572 original size:134 final size:133
Alignment explanation
Indices: 55218--55583 Score: 417
Period size: 134 Copynumber: 2.7 Consensus size: 133
55208 TTTCTATATC
* * * * * *
55218 TGATTTTCCCTCAAGAAGAAGCGAAAGAGATCCCTCTCTTTATAGGTTTGATATTCCTTGAGTAA
1 TGATTTTCCCTCAGGAAGAAGCGGAACAAATCCCTCTCTTTA-AGATTTGATATTCCATGAGTAA
* * * * *
55283 CAGTGGAATAAGTATGCCACGATTCAATCTTCCTTGAGTACCAGTGGAATGAATCAACGCCCCCA
65 CAGTGGAACAAGTCTGCCTCGATTCAATCTTCCATGAGTAACAGTGGAATGAATCAACGCCCCCA
* *
55348 TATC
130 GATA
* * * * * *
55352 TAATTTTCCCTCAGGAAGAAGCAGAACATATCCCTCTATTTTATGATTTGATATTCCCTGAGTAA
1 TGATTTTCCCTCAGGAAGAAGCGGAACAAATCCCTCT-CTTTAAGATTTGATATTCCATGAGTAA
* * * * *
55417 CAGTAGAACAAGTCTGCCTCGATTCAATCTTCCATGAGTAACAGTGGAATGAATTAGCGTCCCTA
65 CAGTGGAACAAGTCTGCCTCGATTCAATCTTCCATGAGTAACAGTGGAATGAATCAACGCCCCCA
55482 GATA
130 GATA
* * *
55486 TGATTTTCCCGCAGGAAGAAGTGGAACAAATCCCTTTCTTTCAAGATTTGATATTCCATGAGTAA
1 TGATTTTCCCTCAGGAAGAAGCGGAACAAATCCCTCTCTTT-AAGATTTGATATTCCATGAGTAA
* * * * *
55551 TAGTGGAACAAATCTGACTCGATTAAATTTTCC
65 CAGTGGAACAAGTCTGCCTCGATTCAATCTTCC
55584 CCGAAGAGTA
Statistics
Matches: 193, Mismatches: 37, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
133 3 0.02
134 186 0.96
135 4 0.02
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (133 bp):
TGATTTTCCCTCAGGAAGAAGCGGAACAAATCCCTCTCTTTAAGATTTGATATTCCATGAGTAAC
AGTGGAACAAGTCTGCCTCGATTCAATCTTCCATGAGTAACAGTGGAATGAATCAACGCCCCCAG
ATA
Found at i:55787 original size:3 final size:3
Alignment explanation
Indices: 55779--55812 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
55769 TGTCCCAACT
* *
55779 TTA TTA TTA TTA TTA TTA TTG TTA TTA GTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
55813 GAGTAATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:58209 original size:160 final size:160
Alignment explanation
Indices: 57938--58229 Score: 498
Period size: 160 Copynumber: 1.8 Consensus size: 160
57928 AAATGACTAT
* * * *
57938 TTTAAAGTATGAGAGGTCGTTTATTCTCGATTGGAAATAATTATATATTTTTATTTTTTTCTCTT
1 TTTAAAGTATGAGAGGTCGTTTATTCTCGATTAGAAATAATTAGATATTATTATTTTTCTCTCTT
58003 AAAATTATTTTGGGTGTTGTTATTTTGAATTAATAATGAACTTTAGAATCG-AATTTTAATATAT
66 AAAATTATTTTGGGTGTTGTTATTTTGAATTAATAATGAACTTTAGAAT-GAAATTTTAATAT-T
58067 TTTTTATTTCATTTAGAGTAAGAATTGATTGC
129 TTTTTATTTCATTTAGAGTAAGAATTGATTGC
* *
58099 TTTAAGGTATGAGAGGTCGTTTATTCTCGATTATAAATAATTAGATATTATTA-TTTTCTCTCTT
1 TTTAAAGTATGAGAGGTCGTTTATTCTCGATTAGAAATAATTAGATATTATTATTTTTCTCTCTT
58163 AAAATTATTTTGGGTGTTGTTATTTTGAATTAATAATGAACTTTAGAATGAAATTTTAATATTTT
66 AAAATTATTTTGGGTGTTGTTATTTTGAATTAATAATGAACTTTAGAATGAAATTTTAATATTTT
58228 TT
131 TT
58230 ACTATTATTT
Statistics
Matches: 124, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
159 6 0.05
160 70 0.56
161 48 0.39
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (160 bp):
TTTAAAGTATGAGAGGTCGTTTATTCTCGATTAGAAATAATTAGATATTATTATTTTTCTCTCTT
AAAATTATTTTGGGTGTTGTTATTTTGAATTAATAATGAACTTTAGAATGAAATTTTAATATTTT
TTTATTTCATTTAGAGTAAGAATTGATTGC
Found at i:59415 original size:37 final size:39
Alignment explanation
Indices: 59374--59488 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 39
59364 GTATATATAA
59374 TAAT-ATAGTAGAGTTTTT-GAAAAT-ATTTTTGAAAAAT
1 TAATAATA-TAGAGTTTTTAGAAAATGATTTTTGAAAAAT
*
59411 TAATAATATATAGTTTTTAGAAAATGATTTTTGAAAGTAAT
1 TAATAATATAGAGTTTTTAGAAAATGATTTTTGAAA--AAT
* *
59452 ATAAT-ATATAG-TTTTTTA-AAAATCGGTTTTTGAAAAA
1 -TAATAATATAGAGTTTTTAGAAAAT-GATTTTTGAAAAA
59489 AATTATATAA
Statistics
Matches: 67, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
37 13 0.19
38 11 0.16
39 15 0.22
40 16 0.24
41 8 0.12
42 4 0.06
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.43
Consensus pattern (39 bp):
TAATAATATAGAGTTTTTAGAAAATGATTTTTGAAAAAT
Found at i:59456 original size:39 final size:39
Alignment explanation
Indices: 59371--59488 Score: 129
Period size: 39 Copynumber: 3.0 Consensus size: 39
59361 TTAGTATATA
59371 TAATAATATAGTAGAGTTTTT-GAAAAT-ATTTTTGAAAAAT
1 TAATAATATA-T--AGTTTTTAGAAAATGATTTTTGAAAAAT
59411 TAATAATATATAGTTTTTAGAAAATGATTTTTGAAAGTAA-
1 TAATAATATATAGTTTTTAGAAAATGATTTTTGAAA--AAT
*
59451 T-ATAATATATAGTTTTTTA-AAAATCGGTTTTTGAAAAA
1 TAATAATATATAG-TTTTTAGAAAAT-GATTTTTGAAAAA
59489 AATTATATAA
Statistics
Matches: 71, Mismatches: 1, Indels: 14
0.83 0.01 0.16
Matches are distributed among these distances:
37 7 0.10
38 8 0.11
39 27 0.38
40 27 0.38
41 2 0.03
ACGTcount: A:0.44, C:0.01, G:0.12, T:0.43
Consensus pattern (39 bp):
TAATAATATATAGTTTTTAGAAAATGATTTTTGAAAAAT
Found at i:59550 original size:23 final size:24
Alignment explanation
Indices: 59520--59566 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
59510 AAACACGCTT
59520 TTGAAAACATA-TAATATATAGTA
1 TTGAAAACATAGTAATATATAGTA
59543 TTGAAAACATATGTAATATATAGT
1 TTGAAAACATA-GTAATATATAGT
59567 TCTTAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 11 0.50
25 11 0.50
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (24 bp):
TTGAAAACATAGTAATATATAGTA
Found at i:59650 original size:35 final size:35
Alignment explanation
Indices: 59591--59681 Score: 128
Period size: 35 Copynumber: 2.5 Consensus size: 35
59581 TTTGGAAAAC
* *
59591 ATATATAGTTTTGAAAACACATTTTTGAAAACATATA
1 ATATATAGTTTT-TAAA-ATATTTTTGAAAACATATA
*
59628 ATATATAGTTTTTAAAATATTTTTGAAAACATGTA
1 ATATATAGTTTTTAAAATATTTTTGAAAACATATA
*
59663 GTATATAGTTTTTAAAATA
1 ATATATAGTTTTTAAAATA
59682 AATATAGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 35 0.70
36 3 0.06
37 12 0.24
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (35 bp):
ATATATAGTTTTTAAAATATTTTTGAAAACATATA
Found at i:67802 original size:202 final size:202
Alignment explanation
Indices: 67455--67853 Score: 475
Period size: 202 Copynumber: 2.0 Consensus size: 202
67445 CACAGTATAG
* ** *
67455 CTCAAGGTGAAAAGGGCTATCTGTCGACAAAAAACTTTTGAGTTTGATTATATTCAGATTGAGGG
1 CTCAAGGTGAAAAGGGCTATCTGTCAACAAAAAACTTTTGAGTTCAATTATATTCAGATCGAGGG
* * ** * *
67520 CGTATCAACCGTAACGTAGCAGTGAGGAACTACTTTTCGGTTAAAGTTTAAGCTGAGGTCTTTAA
66 CATATCAACCGCAACGTAGCAGTGAGGAACTACTTGCCGGTTAAAGTTTAAACCGAGGTCTTTAA
* * *
67585 GTCAAGAAGAAGACCTAGGTTGC-CTT-CGATTTAGCAACAAGGAACTATATCCCAACCGAATTT
131 GCCAAGAAGAAGACCTAGG-T-CACTTGCGATTTAGCAACAAGAAACTACATCCCAACCGAATTT
67648 ATAGTGTAA
194 ATAGTGTAA
* * * * * *
67657 CTCAAGGTGAGAAGGGCTATCTGTCAACGAAAAA-TTTT-ATGTTCAATTCTATTTAGCTCGATG
1 CTCAAGGTGAAAAGGGCTATCTGTCAACAAAAAACTTTTGA-GTTCAATTATATTCAGATCGAGG
** * *
67720 GCATATCAACCGCATGGTAGCAGCT-AGGAACTACTTGCCGGTTGAATTTTAAACCGAGGTCTTT
65 GCATATCAACCGCAACGTAGCAG-TGAGGAACTACTTGCCGGTTAAAGTTTAAACCGAGGTC-TT
* * * *
67784 TAAGCCTAGAAGAAGACCTAGGTCAGTTGCGATTTAGCAACAAGAAACTACCTCCCAACCTAATT
128 TAAGCCAAGAAGAAGACCTAGGTCACTTGCGATTTAGCAACAAGAAACTACATCCCAACCGAATT
67849 TATAG
193 TATAG
67854 AATAACTTAA
Statistics
Matches: 165, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
200 2 0.01
201 72 0.44
202 91 0.55
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (202 bp):
CTCAAGGTGAAAAGGGCTATCTGTCAACAAAAAACTTTTGAGTTCAATTATATTCAGATCGAGGG
CATATCAACCGCAACGTAGCAGTGAGGAACTACTTGCCGGTTAAAGTTTAAACCGAGGTCTTTAA
GCCAAGAAGAAGACCTAGGTCACTTGCGATTTAGCAACAAGAAACTACATCCCAACCGAATTTAT
AGTGTAA
Found at i:68294 original size:37 final size:38
Alignment explanation
Indices: 68250--68477 Score: 189
Period size: 39 Copynumber: 5.9 Consensus size: 38
68240 AATAATATAG
68250 TATAGTTTTTGAAAATA-TTTTTGAAAACAATATAATA
1 TATAGTTTTTGAAAATAGTTTTTGAAAACAATATAATA
* * *
68287 TATAGTTTTTAGAAAACAATTTTTGAAAGCAATATAATA
1 TATAGTTTTT-GAAAATAGTTTTTGAAAACAATATAATA
* * *
68326 TATAGTTTTTTAAAATCAGTTTTTGAATA-TATAT-ATA
1 TATAGTTTTTGAAAAT-AGTTTTTGAAAACAATATAATA
* * * *
68363 TAATATGGTTTCGAAAACACGCTTTTGAAAAC-ATATAATA
1 T-ATA-GTTTTTGAAAATA-GTTTTTGAAAACAATATAATA
* * * *
68403 TATAG-TTTTGAAAACACATTTCTAAAAACATATATAATA
1 TATAGTTTTTGAAAATA-GTTTTTGAAAACA-ATATAATA
* *
68442 TATAG-TTTTAAAAATCAGTTTTGGAAAACATATATA
1 TATAGTTTTTGAAAAT-AGTTTTTGAAAACA-ATATA
68478 GTTTTGAAAA
Statistics
Matches: 155, Mismatches: 25, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
37 33 0.21
38 19 0.12
39 98 0.63
40 5 0.03
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (38 bp):
TATAGTTTTTGAAAATAGTTTTTGAAAACAATATAATA
Found at i:68480 original size:32 final size:32
Alignment explanation
Indices: 68439--68503 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 32
68429 AACATATATA
68439 ATATATAGTTTT-AAAA-ATCAGTTTTGGAAAAC
1 ATATATAGTTTTGAAAACA-CA-TTTTGGAAAAC
*
68471 ATATATAGTTTTGAAAACACATTTTTGAAAAC
1 ATATATAGTTTTGAAAACACATTTTGGAAAAC
68503 A
1 A
68504 CATTTTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 23 0.77
33 6 0.20
34 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.37
Consensus pattern (32 bp):
ATATATAGTTTTGAAAACACATTTTGGAAAAC
Found at i:68498 original size:14 final size:14
Alignment explanation
Indices: 68479--68517 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
68469 ACATATATAG
68479 TTTTGAAAACACAT
1 TTTTGAAAACACAT
68493 TTTTGAAAACACAT
1 TTTTGAAAACACAT
68507 TTTTGAAAACA
1 TTTTGAAAACA
68518 TATAATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (14 bp):
TTTTGAAAACACAT
Found at i:68544 original size:35 final size:36
Alignment explanation
Indices: 68505--68586 Score: 121
Period size: 35 Copynumber: 2.3 Consensus size: 36
68495 TTGAAAACAC
*
68505 ATTTTTGAAAACATATAATATATAGTTTTTAAAAT-
1 ATTTTTGAAAACATATAACATATAGTTTTTAAAATG
* *
68540 ATTTTTGAAAACATATAGCATTTAGTTTTTAAAATG
1 ATTTTTGAAAACATATAACATATAGTTTTTAAAATG
*
68576 GTTTTTGAAAA
1 ATTTTTGAAAA
68587 TTTAATGTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 32 0.76
36 10 0.24
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (36 bp):
ATTTTTGAAAACATATAACATATAGTTTTTAAAATG
Found at i:68645 original size:13 final size:13
Alignment explanation
Indices: 68624--68688 Score: 53
Period size: 13 Copynumber: 4.9 Consensus size: 13
68614 ATAAATATAG
*
68624 TATACATATTATT
1 TATATATATTATT
68637 TATATATATTATT
1 TATATATATTATT
68650 TAT-TAT-TTATT
1 TATATATATTATT
** *
68661 GTGCATTTATTATAT
1 -TATATATATTAT-T
68676 TATATTATATTAT
1 TATA-TATATTAT
68689 ATTGTTATTA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
11 5 0.12
12 4 0.10
13 17 0.43
14 6 0.15
15 8 0.20
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (13 bp):
TATATATATTATT
Found at i:72797 original size:15 final size:15
Alignment explanation
Indices: 72777--72809 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
72767 TATCTCCATG
72777 AATAATTTATTCAAT
1 AATAATTTATTCAAT
72792 AATAATTTATTCAAT
1 AATAATTTATTCAAT
72807 AAT
1 AAT
72810 CTTGATTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (15 bp):
AATAATTTATTCAAT
Done.