genome.fa.s501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000501.1 Hibiscus syriacus cultivar Beakdansim tig00000957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54396

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688--733	19	2.4	19	92	7	76	13	23	0	63	1.30
1232--1268	18	2.1	18	90	5	58	8	2	5	83	0.88
6885--6940	2	28.0	2	100	0	112	50	0	0	50	1.00
7903--7998	20	5.0	20	73	10	92	23	21	29	25	1.99
7904--7996	18	4.9	18	83	7	96	22	21	30	25	1.99
7904--7998	38	2.5	38	84	3	129	24	21	29	25	1.99
8261--8340	4	19.8	4	97	2	151	25	0	25	50	1.50
9165--9232	23	3.0	23	80	4	75	33	23	23	19	1.97
9178--9288	23	4.8	23	85	2	116	32	21	23	22	1.98
9181--9288	46	2.3	46	82	3	128	32	21	23	23	1.98
13527--13564	20	2.1	19	85	14	53	34	0	10	55	1.34
14402--14485	36	2.4	36	97	2	161	29	0	4	65	1.13
14420--14478	18	3.3	18	68	17	59	33	0	6	59	1.24
24215--24243	2	14.5	2	100	0	58	51	0	0	48	1.00
26143--26253	30	3.5	30	69	17	98	38	15	17	28	1.90
26106--26432	133	2.5	133	92	1	521	38	15	17	27	1.91
26106--26432	66	4.9	67	88	3	471	38	15	17	27	1.91
26372--26461	37	2.5	36	81	1	99	41	18	15	24	1.90
26331--26637	103	3.0	102	77	8	316	39	14	16	28	1.88
26375--26637	104	2.6	101	79	7	287	39	15	16	28	1.89
28373--28443	18	3.9	18	98	0	124	16	22	36	23	1.94
30150--30219	23	3.0	23	100	0	140	25	25	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30512--30583	29	2.5	29	93	0	117	36	13	11	38	1.81
30886--31038	69	2.2	69	89	1	227	18	27	26	27	1.98
31018--31060	21	2.0	21	86	0	59	16	25	27	30	1.97
37099--37168	23	3.0	23	100	0	140	25	25	25	22	2.00
37461--37530	27	2.5	28	90	4	106	35	14	11	38	1.82
37832--37983	68	2.2	68	88	2	216	18	27	26	27	1.98
37963--38005	21	2.0	21	86	0	59	16	25	27	30	1.97
38916--38967	22	2.4	22	87	9	72	50	36	7	5	1.55
39352--39488	21	6.6	21	83	9	174	30	26	21	21	1.98
39503--39550	21	2.3	21	100	0	96	18	18	33	29	1.95
40346--40565	21	10.6	21	80	13	242	30	26	20	22	1.98
40346--40545	83	2.4	83	94	1	348	32	26	20	21	1.98
40387--40607	104	2.1	105	87	5	324	28	25	20	24	1.99
40555--40627	20	3.6	20	79	17	96	23	21	19	35	1.96
40548--40675	41	3.1	41	94	3	213	24	22	21	32	1.98
40361--40675	21	15.2	21	78	16	200	28	24	20	26	1.99
40574--40689	21	5.6	21	77	16	116	22	22	24	31	1.99
41364--41401	10	3.8	10	83	10	51	81	5	2	10	0.94
41739--41809	21	3.2	22	67	21	67	30	7	2	59	1.39
41726--41818	44	2.1	44	100	0	186	31	7	4	56	1.46
44895--44946	24	2.1	25	82	10	63	40	3	5	50	1.45
45010--45063	28	2.0	28	92	3	92	33	0	3	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45023--45064	14	3.0	14	76	10	50	28	0	4	66	1.12
45007--45067	27	2.3	25	84	13	86	34	0	3	62	1.12
49739--49798	23	2.5	24	94	5	113	18	41	11	28	1.85

Tables:   1

The End!