genome.fa.s5010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005010.1 Hibiscus syriacus cultivar Beakdansim tig00011247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82825

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1251--1369	21	5.7	21	78	4	114	20	33	20	26	1.97
1251--1369	42	2.8	42	84	0	157	20	33	20	26	1.97
4768--4805	16	2.5	15	84	12	51	65	0	5	28	1.14
4961--5062	20	5.1	20	77	7	100	28	11	22	37	1.89
5217--5558	170	2.0	170	92	2	571	20	13	13	52	1.74
5890--5926	19	2.1	18	90	10	58	54	0	0	45	1.00
7664--7799	51	2.7	51	82	3	141	17	31	28	22	1.96
7785--7815	15	2.1	15	100	0	62	12	32	25	29	1.93
7994--8034	18	2.3	18	87	4	57	29	7	2	60	1.36
9683--9717	18	1.9	18	94	0	61	25	22	22	28	1.99
10215--10286	26	3.0	24	68	27	62	26	6	4	62	1.39
13677--13709	12	2.8	12	95	0	57	66	6	0	27	1.15
21180--21320	72	1.9	73	92	1	239	28	14	17	39	1.89
23625--23704	2	40.0	2	100	0	160	50	0	0	50	1.00
23856--23895	16	2.5	17	84	12	57	45	5	2	47	1.38
25093--25190	20	4.8	20	77	3	88	36	23	18	21	1.95
25093--25190	41	2.4	41	77	6	110	36	23	18	21	1.95
25177--25347	20	8.5	20	79	5	112	35	25	19	20	1.96
25157--25347	40	4.8	40	82	3	188	36	24	19	19	1.95
25157--25347	60	3.2	60	83	0	238	36	24	19	19	1.95
25733--25803	33	2.2	33	94	0	124	11	23	16	47	1.79
25883--25957	20	3.8	20	80	5	89	42	20	24	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25941--25997	14	3.7	14	75	20	60	43	22	24	8	1.81
25895--26002	33	3.1	33	88	8	144	44	20	25	10	1.82
25895--25983	19	4.9	19	73	15	80	43	21	23	11	1.84
26030--26118	14	5.7	14	71	21	70	10	24	22	42	1.84
26013--26126	33	3.5	33	91	2	194	10	22	20	46	1.81
26008--26104	19	5.7	18	70	20	75	11	22	21	44	1.84
27824--28288	93	5.0	93	98	0	896	21	12	18	46	1.83
28336--28464	19	7.3	19	74	17	107	45	27	17	8	1.78
28352--28464	19	6.5	19	74	19	120	46	28	17	7	1.74
28372--28464	33	2.8	32	91	4	150	46	27	18	7	1.76
28352--28464	52	2.2	51	81	9	131	46	28	17	7	1.74
28460--28594	19	7.6	19	75	16	128	11	19	23	45	1.82
28482--28538	14	3.7	14	77	20	60	10	21	22	45	1.82
28465--28557	33	2.8	33	95	0	168	10	20	21	47	1.80
30490--30525	14	2.6	14	95	0	63	33	0	22	44	1.53
30632--30733	19	5.6	19	84	13	151	44	17	23	14	1.86
30748--30802	14	3.6	14	76	21	56	10	21	20	47	1.80
30762--31068	19	17.4	19	80	16	385	14	20	18	46	1.83
30762--31040	52	5.2	55	88	9	356	14	21	17	46	1.83
30740--31068	71	4.8	71	86	11	445	13	21	18	46	1.83
33348--33372	12	2.1	12	100	0	50	0	28	0	72	0.86
33547--33593	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34274--34483	20	10.5	20	85	2	215	20	17	25	37	1.94
36269--36323	24	2.3	24	96	0	101	60	16	16	7	1.57
42431--42459	13	2.3	13	94	5	51	48	0	31	20	1.50
51545--51582	16	2.2	18	86	13	62	39	10	5	44	1.61
53818--53871	28	1.9	28	96	0	99	29	3	14	51	1.60
56349--56628	135	2.1	138	87	4	417	42	16	12	28	1.85
64259--64283	10	2.5	10	100	0	50	36	16	0	48	1.46
68739--68799	32	1.9	32	82	0	77	8	9	27	54	1.62
71608--71664	27	2.1	28	86	3	80	33	21	7	38	1.80
75717--75764	18	2.7	18	100	0	96	22	25	12	39	1.89
77099--77173	33	2.2	33	97	2	141	53	14	14	17	1.73
78687--78727	20	2.2	18	86	8	55	70	0	0	29	0.87
80010--80052	17	2.5	17	100	0	86	13	25	18	41	1.88
81227--81312	26	3.3	27	88	6	133	45	4	12	37	1.63

Tables:   1

The End!