Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005011.1 Hibiscus syriacus cultivar Beakdansim tig00011248_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61542

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11489--11536
19
2.5
19
74
12
53
27
4
14
54
1.59
12310--12372
23
2.7
23
78
4
65
25
9
4
60
1.47
24175--24222
24
2.0
25
83
4
62
50
12
25
12
1.75
32236--32304
8
9.0
8
76
9
72
82
11
5
0
0.83
32238--32303
15
4.4
15
75
17
66
83
10
6
0
0.81
32237--32315
19
4.3
19
81
15
87
81
11
7
0
0.89
32237--32315
38
2.1
39
90
2
124
81
11
7
0
0.89
37025--37063
15
2.6
15
87
0
51
33
0
33
33
1.58
41090--41115
10
2.6
10
100
0
52
7
34
0
57
1.27
41361--41430
34
2.1
34
100
0
140
40
2
21
35
1.68
41730--41798
34
2.0
34
88
8
104
26
15
30
27
1.96
43287--43341
24
2.3
24
100
0
110
40
25
20
14
1.90
47511--47549
15
2.6
15
91
0
60
17
20
20
41
1.91
48469--48519
20
2.5
21
78
12
52
47
5
9
37
1.61
53981--54018
19
2.0
19
100
0
76
26
0
10
63
1.27
56986--57842
81
10.7
80
84
6
1067
32
20
10
35
1.88
56986--57842
161
5.4
161
85
4
1130
32
20
10
35
1.88
56986--57848
242
3.6
241
84
4
1131
32
20
10
35
1.88
58053--58083
15
2.1
15
93
0
53
64
12
3
19
1.41
60003--60098
21
4.6
21
84
0
120
33
22
20
22
1.97
60113--60329
21
10.3
21
73
12
126
22
21
24
31
1.98
60262--60392
42
3.2
42
90
3
205
19
18
23
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60281--60399
21
5.9
20
69
18
86
21
19
21
38
1.93
60486--60522
18
2.2
16
90
9
56
29
48
16
5
1.68
61119--61317
42
4.8
42
79
12
223
37
21
19
22
1.95
61166--61498
102
3.3
103
88
7
463
36
22
19
21
1.95
61309--61479
41
4.2
41
84
9
219
36
23
19
19
1.95
61265--61478
60
3.5
61
79
12
192
37
22
19
20
1.94
61154--61498
21
17.0
19
75
15
223
35
23
19
21
1.96

Tables:   1

The End!