genome.fa.s5015.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005015.1 Hibiscus syriacus cultivar Beakdansim tig00011258_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87724

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--434	195	2.2	201	84	4	569	30	19	21	27	1.98
1074--1147	23	3.3	23	83	3	98	32	25	21	20	1.97
1044--1168	44	2.9	43	70	17	105	32	26	21	20	1.98
1319--1368	21	2.4	21	80	6	57	26	20	14	40	1.90
1711--1762	20	2.6	20	78	0	68	28	34	17	19	1.94
8162--8211	21	2.4	21	83	6	57	26	20	12	42	1.86
8524--8577	22	2.6	20	82	5	63	24	33	24	18	1.97
8689--8745	22	2.5	24	81	13	68	33	29	15	21	1.94
10313--10526	37	5.8	36	82	9	263	45	3	8	42	1.52
10313--10526	75	2.9	70	86	6	248	45	3	8	42	1.52
11656--11716	24	2.6	23	76	7	59	26	6	1	65	1.26
11679--11723	15	2.8	16	76	10	56	20	6	0	73	1.05
11674--11723	24	2.1	24	88	7	75	22	8	0	70	1.13
12809--12989	98	1.9	97	85	3	256	25	20	16	37	1.93
12894--13110	115	1.9	114	81	1	265	25	22	15	36	1.93
13278--13336	17	3.5	17	72	13	50	25	10	1	62	1.36
13574--13623	2	25.0	2	100	0	100	50	0	0	50	1.00
13802--13838	14	2.6	14	91	0	56	13	8	5	72	1.24
22241--22413	89	1.9	89	100	0	346	25	32	11	30	1.91
29248--29305	22	2.6	23	78	15	68	44	5	6	43	1.53
29264--29321	25	2.5	24	79	17	68	41	5	10	43	1.61
29230--29392	88	1.9	85	83	8	213	47	4	6	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29343--29392	22	2.3	22	82	0	64	44	2	8	46	1.44
29362--29421	29	2.0	29	83	3	75	45	0	8	46	1.33
29426--29480	5	11.2	5	94	1	76	38	5	0	56	1.23
31829--31873	23	2.0	23	82	8	56	46	0	8	44	1.34
33003--33042	2	20.0	2	100	0	80	50	0	0	50	1.00
33491--33534	18	2.5	17	85	7	52	27	2	0	70	0.99
34483--34535	24	2.2	24	89	0	79	41	13	26	18	1.87
38240--38323	20	4.2	20	90	6	134	47	11	15	25	1.79
40051--40143	20	4.7	20	77	2	98	41	22	15	20	1.89
40061--40143	39	2.1	40	93	2	141	42	24	15	18	1.89
40315--40352	16	2.5	15	84	12	51	28	5	0	65	1.14
40834--40883	23	2.2	23	100	0	100	32	22	10	36	1.87
43401--43436	18	2.0	18	94	0	63	55	25	2	16	1.55
43721--43759	20	2.0	20	94	0	69	43	23	15	17	1.87
43771--43817	20	2.3	20	92	0	76	40	19	19	21	1.92
44883--45023	62	2.2	63	88	6	205	51	17	0	30	1.51
52149--52190	8	5.4	8	77	5	50	57	0	0	42	0.99
52143--52202	23	2.6	23	94	0	102	51	0	0	48	1.00
73593--73621	2	14.5	2	100	0	58	48	0	0	51	1.00
75840--75897	28	2.1	28	87	6	82	34	6	8	50	1.60
80128--80179	21	2.5	21	100	0	104	13	30	38	17	1.88
80532--80590	3	18.7	3	86	6	73	61	1	1	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80832--81180	133	2.6	134	85	3	445	25	16	28	28	1.97
81183--81523	65	5.2	65	84	5	370	36	13	18	31	1.89
81183--81523	132	2.6	129	82	8	404	36	13	18	31	1.89
82152--82207	16	3.5	16	90	0	85	26	0	23	50	1.50
85049--85103	20	2.8	20	97	0	101	29	32	16	21	1.95
85113--85270	63	2.5	62	84	8	203	30	22	18	28	1.97
85242--85290	19	2.6	19	84	9	57	24	30	18	26	1.98
85335--85383	21	2.4	21	96	3	91	24	28	20	26	1.99

Tables:   1

The End!