genome.fa.s5016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005016.1 Hibiscus syriacus cultivar Beakdansim tig00011260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68469

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8575--8734	65	2.5	66	86	7	213	31	23	17	27	1.97
12678--12728	18	2.9	17	78	13	59	37	0	11	50	1.39
21368--21820	201	2.3	198	81	6	500	35	20	8	35	1.83
23396--23424	9	3.0	10	90	10	51	41	0	0	58	0.98
27759--27786	4	7.0	4	100	0	56	75	0	0	25	0.81
32349--32380	17	1.9	17	93	6	57	34	0	0	65	0.93
41141--41189	24	2.0	25	88	4	73	36	26	14	22	1.92
41218--41262	22	2.1	22	87	4	65	24	28	26	20	1.99
41832--41916	23	3.7	23	69	13	57	27	24	28	20	1.99
43670--43726	22	2.6	22	97	0	105	49	17	21	12	1.79
44759--44892	67	2.0	67	80	4	153	43	4	9	42	1.57
44709--45057	22	15.3	23	72	16	212	44	4	8	43	1.52
44798--44936	45	3.2	42	68	16	120	44	2	7	44	1.48
44732--45031	89	3.2	89	86	9	374	43	4	8	44	1.53
44838--45006	72	2.4	69	81	6	178	44	4	8	42	1.55
45018--45057	21	1.9	21	89	0	62	45	2	7	45	1.45
45028--45091	26	2.4	27	84	10	78	45	0	6	48	1.27
45100--45137	3	12.7	3	100	0	76	31	0	0	68	0.90
53527--53591	30	2.2	30	86	10	89	18	13	6	61	1.52
53601--53675	25	3.0	23	79	16	78	20	6	0	73	1.05
53615--53675	26	2.4	25	91	8	97	22	4	0	72	1.04
55217--55265	21	2.3	21	89	6	73	42	2	6	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56141--56264	29	4.3	29	88	4	187	20	37	8	33	1.84
57075--57143	3	22.3	3	77	16	61	60	0	1	37	1.06
57399--58043	45	14.2	45	92	1	1029	33	18	23	24	1.97
57399--58043	91	7.1	91	93	0	1069	33	18	23	24	1.97
58724--58779	20	2.7	20	91	5	76	35	14	14	35	1.86
58737--58779	20	2.2	20	100	0	86	34	13	18	32	1.90
59999--60049	2	26.5	2	88	7	79	49	0	0	50	1.00
60154--60202	21	2.3	21	89	6	73	44	2	4	48	1.33
60037--60280	135	1.8	132	85	6	339	46	9	7	37	1.64
67185--67233	22	2.3	22	92	3	82	28	28	10	32	1.90

Tables:   1

The End!