Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005017.1 Hibiscus syriacus cultivar Beakdansim tig00011261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139654

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3616--3659
23
2.0
21
82
13
52
36
18
9
36
1.82
13378--13418
21
2.0
21
85
4
57
4
7
4
82
0.93
14257--14643
192
2.0
192
96
0
720
20
21
26
31
1.98
15712--15749
16
2.5
15
87
8
58
84
0
13
2
0.73
16912--16954
23
1.9
21
81
13
50
30
18
16
34
1.93
18365--18404
17
2.4
17
86
0
53
32
15
12
40
1.84
18464--18505
18
2.3
18
91
0
66
30
7
9
52
1.61
21996--22030
17
2.1
17
88
0
52
31
14
14
40
1.86
22086--22131
18
2.6
18
92
0
74
32
6
13
47
1.68
38429--38475
22
2.2
22
85
7
62
4
8
8
78
1.07
41280--41334
19
2.8
20
76
18
60
43
10
12
32
1.78
43425--43479
23
2.3
23
76
17
60
29
16
16
38
1.90
43432--43474
23
1.9
22
86
13
61
32
13
18
34
1.90
51512--51538
14
1.9
14
100
0
54
37
0
40
22
1.54
65863--65905
23
1.9
21
81
13
50
34
13
18
32
1.90
73842--73868
14
1.9
14
100
0
54
37
0
40
22
1.54
77162--77210
16
2.9
16
84
6
53
61
0
22
16
1.34
77651--77699
15
3.1
16
82
11
57
61
0
26
12
1.31
79486--79520
14
2.4
14
95
4
61
57
14
0
28
1.38
92572--92601
13
2.4
13
94
5
53
26
30
0
43
1.55
100640--100685
15
2.9
16
84
12
60
60
0
30
8
1.26
106581--106954
202
1.9
202
88
3
565
34
8
30
26
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115115--115164
26
2.0
25
84
4
64
34
40
0
26
1.56
115133--115174
22
2.0
21
90
4
66
38
33
2
26
1.69
125156--125205
19
2.5
20
90
3
75
44
6
12
38
1.66
127432--127484
21
2.5
21
76
11
54
18
16
7
56
1.63
128268--128312
18
2.5
18
100
0
90
60
0
28
11
1.31
128530--128573
6
7.3
6
82
10
54
0
13
4
81
0.83
128752--128796
12
3.7
12
85
5
63
68
0
15
15
1.21
129333--129375
20
2.2
20
95
4
79
48
4
11
34
1.60

Tables:   1

The End!