genome.fa.s5018.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005018.1 Hibiscus syriacus cultivar Beakdansim tig00011264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97989

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1804--1841	20	1.9	20	89	10	60	36	15	15	31	1.90
4829--4868	20	2.0	20	95	0	71	35	17	15	32	1.91
5786--5832	20	2.3	21	96	3	87	29	8	44	17	1.78
29724--29767	21	2.1	21	82	0	52	22	13	22	40	1.89
33420--33520	50	2.0	50	94	0	175	37	17	12	31	1.88
40318--40348	2	15.5	2	93	0	53	45	0	3	51	1.17
47907--47988	42	2.0	42	85	0	110	34	21	14	29	1.93
47418--48205	251	3.1	250	79	4	798	33	14	16	36	1.89
48624--48765	44	3.2	45	86	4	191	27	23	16	32	1.96
52396--52468	20	3.7	20	81	3	85	26	28	21	23	1.99
52390--52476	40	2.2	39	83	6	113	32	24	20	22	1.98
52403--52489	40	2.2	41	81	8	99	33	26	19	20	1.97
53198--53243	20	2.4	20	82	17	62	32	19	26	21	1.97
53297--53341	19	2.3	20	84	3	56	28	17	26	26	1.98
54588--54687	30	3.3	30	97	0	182	31	18	17	34	1.93
55033--55060	5	5.6	5	100	0	56	39	0	17	42	1.50
56493--56617	47	2.8	45	85	7	173	32	21	6	40	1.79
56728--56888	57	2.8	57	95	0	277	28	27	17	26	1.98
58193--58497	21	14.6	21	79	10	134	21	20	22	35	1.96
58239--58476	42	5.7	40	85	6	305	21	20	21	36	1.95
58239--58476	84	2.9	82	91	3	386	21	20	21	36	1.95
58260--58518	21	12.4	21	77	12	232	22	20	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58615--58655	6	6.8	6	100	0	82	34	48	17	0	1.47
59135--59270	5	26.6	5	90	4	92	0	37	27	34	1.57
59237--59301	5	12.0	5	96	3	85	0	18	44	36	1.50
59474--59520	21	2.2	21	88	0	67	27	25	19	27	1.99
59529--59583	21	2.6	21	94	0	92	20	21	27	30	1.98
65539--65589	21	2.3	23	86	10	70	50	0	0	49	1.00
65556--65650	22	4.0	23	73	20	70	50	1	0	48	1.07
65567--65732	29	5.4	31	72	22	111	45	0	1	53	1.12
65649--65695	24	2.0	23	83	4	58	40	0	2	57	1.11
65674--65737	28	2.2	28	83	8	76	43	0	1	54	1.09
65754--65923	90	1.9	86	80	9	191	50	5	0	44	1.24
65941--65980	21	1.9	21	84	0	53	37	0	2	60	1.11
66115--66154	15	2.7	15	92	0	62	45	10	2	42	1.51
66115--66163	15	3.3	14	80	11	53	42	10	6	40	1.63
71535--71576	22	1.9	22	95	0	75	54	0	16	28	1.42
78979--79023	20	2.3	20	88	3	65	37	0	24	37	1.56
82000--82061	24	2.6	24	84	0	79	22	14	17	45	1.85
82040--82093	24	2.2	24	80	0	63	24	5	18	51	1.67
85490--85610	51	2.5	47	80	12	120	41	6	19	32	1.78
88487--88560	17	4.3	17	80	17	82	71	1	17	9	1.19
88482--88560	34	2.3	35	81	18	103	72	1	17	8	1.17
92415--92535	51	2.5	47	80	12	120	41	6	19	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93723--93792	2	35.5	2	97	2	133	48	0	0	51	1.00
97372--97469	33	2.9	33	89	10	146	45	2	7	44	1.42
97354--97708	37	10.3	33	73	19	134	44	3	7	44	1.49
97556--97673	36	3.4	35	81	13	136	46	4	5	43	1.47
97561--97673	37	3.2	35	84	11	135	45	4	6	44	1.49
97642--97701	24	2.5	23	74	12	59	41	5	6	46	1.52
97666--97725	31	1.9	31	86	0	84	45	1	6	46	1.39
97359--97725	139	2.7	133	77	15	385	44	3	7	44	1.49
97767--97798	8	3.9	8	95	4	55	21	0	0	78	0.76
97767--97798	17	1.9	16	93	6	55	21	0	0	78	0.76

Tables:   1

The End!