Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005019.1 Hibiscus syriacus cultivar Beakdansim tig00011265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62315

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
738--815
28
2.8
28
88
5
106
56
12
0
30
1.37
1473--1599
29
4.2
29
76
7
101
18
25
32
24
1.97
4768--4980
104
2.0
104
99
0
417
29
13
23
33
1.93
11838--11863
2
13.0
2
100
0
52
50
0
0
50
1.00
11905--11943
20
2.0
20
85
5
53
46
0
5
48
1.24
25083--25206
54
2.3
54
90
0
185
21
24
32
21
1.98
25542--25566
10
2.5
10
100
0
50
12
52
0
36
1.39
25834--25877
17
2.6
17
85
7
63
56
29
0
13
1.38
27837--27923
21
4.0
21
75
10
77
14
25
37
21
1.92
33147--33270
54
2.3
54
88
0
176
22
24
31
21
1.98
33570--33720
20
7.6
20
75
12
114
39
25
13
21
1.89
33669--33800
19
6.7
19
82
8
131
35
20
12
31
1.90
33570--33800
40
5.8
41
77
8
165
37
23
13
25
1.91
33957--33994
16
2.5
15
84
12
51
28
5
0
65
1.14
34588--34621
12
2.8
12
90
0
50
55
29
0
14
1.40
34747--34800
24
2.2
24
93
0
90
20
18
20
40
1.91
36915--36950
18
2.0
18
94
0
63
55
25
2
16
1.55
37260--37308
20
2.5
20
82
0
62
22
16
22
38
1.92
37362--37600
65
3.6
65
92
4
374
52
17
2
28
1.57
38795--39018
64
3.5
64
79
4
204
32
20
18
28
1.96
39528--39718
31
6.2
31
93
0
337
39
12
15
33
1.84
42772--42996
64
3.5
64
82
3
240
32
20
18
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43509--43562
16
3.4
16
67
23
51
38
12
16
31
1.87
43505--43695
31
6.2
31
92
0
310
39
10
15
35
1.81
45283--45358
21
3.6
21
83
3
91
25
23
30
21
1.99
45632--45681
21
2.4
21
82
0
64
38
32
12
18
1.87
47423--47462
20
2.0
20
85
0
53
15
12
22
50
1.77
47983--48086
41
2.6
40
79
1
127
18
12
24
45
1.84
47959--48078
20
5.9
20
77
5
107
20
15
22
41
1.90
47983--48086
20
5.2
20
81
2
127
18
12
24
45
1.84
48891--48915
7
3.6
7
100
0
50
16
12
12
60
1.60
53809--53870
26
2.4
26
91
0
97
35
19
20
24
1.96
57899--57931
6
5.3
6
96
3
57
21
0
0
78
0.75
57901--57957
19
3.1
18
80
7
62
28
0
0
71
0.86
59002--59031
14
2.1
14
100
0
60
40
6
6
46
1.56
60554--60594
19
2.1
20
86
4
57
19
2
0
78
0.87

Tables:   1

The End!