Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000502.1 Hibiscus syriacus cultivar Beakdansim tig00000959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88957
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:762 original size:22 final size:22
Alignment explanation
Indices: 737--807 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 22
727 CCACAGTTCG
737 TAATTTGCACCGAAGTACCACA
1 TAATTTGCACCGAAGTACCACA
759 TAA-TTGTC-CCGAA-TGACCACA
1 TAATTTG-CACCGAAGT-ACCACA
** * *
780 TAGGTTGCATCGAAGTGCCACA
1 TAATTTGCACCGAAGTACCACA
802 T-ATTTG
1 TAATTTG
808 TCCTTAGGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
20 1 0.03
21 20 0.51
22 17 0.44
23 1 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (22 bp):
TAATTTGCACCGAAGTACCACA
Found at i:771 original size:21 final size:21
Alignment explanation
Indices: 746--844 Score: 69
Period size: 21 Copynumber: 4.7 Consensus size: 21
736 GTAATTTGCA
746 CCGAAGTACCACATAATTGTC
1 CCGAAGTACCACATAATTGTC
*
767 CCGAA-TGACCACATAGGTTG-C
1 CCGAAGT-ACCACATA-ATTGTC
* * *
788 ATCGAAGTGCCACATATTTGT-
1 -CCGAAGTACCACATAATTGTC
** * *
809 CCTTAGGATCACATAATTGTC
1 CCGAAGTACCACATAATTGTC
*
830 CCGAAGGACCACATA
1 CCGAAGTACCACATA
845 GACCCTCGAC
Statistics
Matches: 58, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
20 14 0.24
21 29 0.50
22 14 0.24
23 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (21 bp):
CCGAAGTACCACATAATTGTC
Found at i:955 original size:39 final size:39
Alignment explanation
Indices: 901--992 Score: 157
Period size: 39 Copynumber: 2.3 Consensus size: 39
891 TACATTGGGC
* *
901 TTTTAATCAAATAATTAGGTTCAATCCTTATTCAAAGTG
1 TTTTATTCACATAATTAGGTTCAATCCTTATTCAAAGTG
940 TTTTATTCACATAATTAGGTTCAATCCTTATTCAAAGTG
1 TTTTATTCACATAATTAGGTTCAATCCTTATTCAAAGTG
979 TTCTTATTCACATA
1 TT-TTATTCACATA
993 GCTTCTCATC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 39 0.78
40 11 0.22
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (39 bp):
TTTTATTCACATAATTAGGTTCAATCCTTATTCAAAGTG
Found at i:1528 original size:53 final size:54
Alignment explanation
Indices: 1395--1536 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 54
1385 TCATAACAAG
*
1395 GGGTATCAATACACTCCTCAGTGTACCGATACACAAATTGCATTCGATGTTTAA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATTGCATTCGATGTTTAA
* * *
1449 GGGTATTGATACACTCCTCAGCGTACCGATACACAAA-TGACATTCGATG-TTGA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATTG-CATTCGATGTTTAA
1502 GGGTATCGATACACTCCTCAGTGTACCGATACACA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACA
1537 CTCATACAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 38 0.47
54 43 0.53
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (54 bp):
GGGTATCGATACACTCCTCAGTGTACCGATACACAAATTGCATTCGATGTTTAA
Found at i:6095 original size:73 final size:73
Alignment explanation
Indices: 6001--6138 Score: 231
Period size: 73 Copynumber: 1.9 Consensus size: 73
5991 GAGGATGCTG
* * * *
6001 TGGATTCTGTTCTAGTCTGAGGTTGAGAACTTGAACCTCTACTTTTATTTGATTGCGAAGAACCG
1 TGGATTCTGCTCTAGTATGAGGTTAAAAACTTGAACCTCTACTTTTATTTGATTGCGAAGAACCG
6066 AACGATGA
66 AACGATGA
*
6074 TGGATTCTGCTCTGGTATGAGGTTAAAAACTTGAACCTCTACTTTTATTTGATTGCGAAGAACCG
1 TGGATTCTGCTCTAGTATGAGGTTAAAAACTTGAACCTCTACTTTTATTTGATTGCGAAGAACCG
6139 GAGGATGCAC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (73 bp):
TGGATTCTGCTCTAGTATGAGGTTAAAAACTTGAACCTCTACTTTTATTTGATTGCGAAGAACCG
AACGATGA
Found at i:7291 original size:2 final size:2
Alignment explanation
Indices: 7284--7319 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7274 ACAAAATACA
7284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7320 TCAAAATCGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7748 original size:22 final size:22
Alignment explanation
Indices: 7723--7794 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 22
7713 CCACAGCTCG
7723 TAATTTGTACCGAAGTGCCACA
1 TAATTTGTACCGAAGTGCCACA
* *
7745 TAA-TTATCCCGAA-TGACCACA
1 TAATTTGTACCGAAGTG-CCACA
** *
7766 TAGGTTGCACCGAAGTGCCACA
1 TAATTTGTACCGAAGTGCCACA
7788 T-ATTTGT
1 TAATTTGT
7795 CCCATAGGAC
Statistics
Matches: 38, Mismatches: 9, Indels: 7
0.70 0.17 0.13
Matches are distributed among these distances:
20 2 0.05
21 18 0.47
22 16 0.42
23 2 0.05
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (22 bp):
TAATTTGTACCGAAGTGCCACA
Found at i:7757 original size:21 final size:22
Alignment explanation
Indices: 7732--7831 Score: 79
Period size: 21 Copynumber: 4.7 Consensus size: 22
7722 GTAATTTGTA
7732 CCGAAGTG-CCACATAATTATC
1 CCGAAGTGACCACATAATTATC
* *
7753 CCGAA-TGACCACATAGGTT-GC
1 CCGAAGTGACCACATA-ATTATC
* *
7774 ACCGAAGTG-CCACATATTTGTC
1 -CCGAAGTGACCACATAATTATC
7796 CC-ATAG-GACCACATAATTATC
1 CCGA-AGTGACCACATAATTATC
*
7817 CCGTAG-GACCACATA
1 CCGAAGTGACCACATA
7832 GACCCTCGAC
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
20 4 0.06
21 43 0.67
22 15 0.23
23 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (22 bp):
CCGAAGTGACCACATAATTATC
Found at i:7994 original size:21 final size:20
Alignment explanation
Indices: 7965--8011 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
7955 ATAGAGTATA
*
7965 TTCACATTCAATGATTCAAAG
1 TTCATATTCAATGATT-AAAG
* *
7986 TTCATATTCACTTATTAAAG
1 TTCATATTCAATGATTAAAG
8006 TTCATA
1 TTCATA
8012 ACACATAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.40
Consensus pattern (20 bp):
TTCATATTCAATGATTAAAG
Found at i:8418 original size:54 final size:54
Alignment explanation
Indices: 8336--8478 Score: 234
Period size: 54 Copynumber: 2.6 Consensus size: 54
8326 TCATAACAGG
8336 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATTG-CATTCGATGTTTGA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACAAA-TGACATTCGATGTTTGA
* * *
8390 GGGTATCAATACACTCCTCAGTATACCGATACACAAATGACATTTGATGTTTGA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATGACATTCGATGTTTGA
*
8444 GGGTAACGATACACTCCTCAGTGTACCGATACACA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACA
8479 CTCATACAAA
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 2 0.02
54 80 0.98
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (54 bp):
GGGTATCGATACACTCCTCAGTGTACCGATACACAAATGACATTCGATGTTTGA
Found at i:9355 original size:17 final size:17
Alignment explanation
Indices: 9333--9365 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9323 TAATCCATTT
9333 AGACATAAATCATATCA
1 AGACATAAATCATATCA
*
9350 AGACATATATCATATC
1 AGACATAAATCATATC
9366 TAAGTTAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.27
Consensus pattern (17 bp):
AGACATAAATCATATCA
Found at i:12100 original size:21 final size:21
Alignment explanation
Indices: 12066--12105 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
12056 GCCACTCATA
*
12066 TTTTAAATTAAATAAATATATT
1 TTTTAAAATAAAT-AATATATT
12088 TTTTAAAAT-AATAATATA
1 TTTTAAAATAAATAATATA
12106 ACAATATCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTTAAAATAAATAATATATT
Found at i:12904 original size:2 final size:2
Alignment explanation
Indices: 12897--12925 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
12887 TCTAAAACTT
12897 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
12926 TTTGGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:22739 original size:83 final size:81
Alignment explanation
Indices: 22519--22751 Score: 236
Period size: 83 Copynumber: 2.8 Consensus size: 81
22509 AATAATACTT
* * * * *
22519 TAGTGGCGTTTCTT-CAACAAACGCTGCGATAGAGTTGTACTTTAGTGGCGTTTTTATACAAACG
1 TAGTGGCGTTT-TTCCAACAAACGCCGCGATAAAG-AGTACTTTAGTGG-ATTTTTATACAAATG
*
22583 CCGTAATAAGGATCGTTTA
63 CCGTAATAAGGATAGTTTA
* * * **
22602 TAATGGCGTTTTTCTAACAAACGCCACGATAGATTAGTA-TGTTAGTGGCATTTTTATACAAATG
1 TAGTGGCGTTTTTCCAACAAACGCCGCGATA-AAGAGTACT-TTAGTGG-ATTTTTATACAAATG
* * *
22666 TCGTAATAGGGTTAGTTTA
63 CCGTAATAAGGATAGTTTA
* *
22685 TAGTGGCGTTTTTCCAACAAACGCCGTGATAAAGAGTACTTTAGCGGTATTTTTTATACAAATGC
1 TAGTGGCGTTTTTCCAACAAACGCCGCGATAAAGAGTACTTTAGTGG-A-TTTTTATACAAATGC
22750 CG
64 CG
22752 CATAGGGTTT
Statistics
Matches: 122, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
82 15 0.12
83 107 0.88
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35
Consensus pattern (81 bp):
TAGTGGCGTTTTTCCAACAAACGCCGCGATAAAGAGTACTTTAGTGGATTTTTATACAAATGCCG
TAATAAGGATAGTTTA
Found at i:26068 original size:43 final size:42
Alignment explanation
Indices: 25981--26313 Score: 317
Period size: 43 Copynumber: 7.8 Consensus size: 42
25971 AAGGTAATTA
* * * **
25981 GCGGCGTTTGTATCAAAAAAATGCCGCAATAGATATGATATTTT
1 GCGGCGTTTGT-TC-CAAAAACGCCGCTATAGATATGACCTTTT
* * *
26025 GCGGCTTTTGTATCCAAAAACGCCGCCATAGATCTGACCTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATGACCTTTT
* ** * *
26068 GCGGTGTTTACTCC-AAAACGCCGTTATAGATATCAACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATAT-GACCTTTT
* * * * *
26110 GCAGCGTTTGTTCAAAAAACGCAGCTATAGATTTTACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTT
* * * * *
26152 GCGGCGTTTGTATCCTAAAATGCCGTTATATATATCAACCTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATAT-GACCTTTT
*
26196 GCGGCGTTTGTTCCAAAAACGTCGCTATAGATATTGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATA-TGACCTTTT
* * * *
26239 GCAGCGTTTATTCCAAAAACACCGCTATAGATAGCGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATA-TGACCTTTT
* *
26282 GCGGCGTTTGTTCCAAAAACACCGCGATAGAT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGAT
26314 CTTAACCTAT
Statistics
Matches: 236, Mismatches: 48, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
41 16 0.07
42 36 0.15
43 152 0.64
44 32 0.14
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (42 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTT
Found at i:38050 original size:23 final size:22
Alignment explanation
Indices: 38009--38073 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
37999 CTACATATTA
38009 TTTTTTTGTTATTTT-TTTTAC
1 TTTTTTTGTTATTTTATTTTAC
*
38030 TTTCTTTTGTTATTTTATTTTTC
1 TTT-TTTTGTTATTTTATTTTAC
**
38053 TTTTTCTTGTTACATTATTTT
1 TTTTT-TTGTTATTTTATTTT
38074 CTCTTATTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 3 0.08
22 14 0.37
23 21 0.55
ACGTcount: A:0.11, C:0.08, G:0.05, T:0.77
Consensus pattern (22 bp):
TTTTTTTGTTATTTTATTTTAC
Found at i:38058 original size:25 final size:22
Alignment explanation
Indices: 38012--38064 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
38002 CATATTATTT
38012 TTTTGTTATTTTTTTTACTTTC
1 TTTTGTTATTTTTTTTACTTTC
*
38034 TTTTGTTATTTTATTTTTCTTT-
1 TTTTGTTATTTT-TTTTACTTTC
38056 TTCTTGTTA
1 TT-TTGTTA
38065 CATTATTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.09, C:0.08, G:0.06, T:0.77
Consensus pattern (22 bp):
TTTTGTTATTTTTTTTACTTTC
Found at i:38164 original size:15 final size:17
Alignment explanation
Indices: 38144--38175 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
38134 CATAATATAA
38144 TAAATT-CAAG-TAGAT
1 TAAATTACAAGATAGAT
38159 TAAATTACAAGATAGAT
1 TAAATTACAAGATAGAT
38176 AAAAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (17 bp):
TAAATTACAAGATAGAT
Found at i:50064 original size:20 final size:20
Alignment explanation
Indices: 49970--50338 Score: 451
Period size: 20 Copynumber: 18.4 Consensus size: 20
49960 GATTTTCCAT
* ** *
49970 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
49990 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
50010 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
50030 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
50050 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
50070 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
50090 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
50110 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
50130 AA-CTGCAACGTGTATCCGTA
1 AATC-GCAACGCGTATCCGTA
50150 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
50170 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
50190 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
50210 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
50230 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
50250 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
50270 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
50290 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
50310 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
50330 AATCACAAC
1 AATCGCAAC
50339 ACTTAAATTT
Statistics
Matches: 305, Mismatches: 34, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
19 4 0.01
20 297 0.97
21 4 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:51060 original size:24 final size:24
Alignment explanation
Indices: 51021--51067 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
51011 AAATTTGGTC
51021 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
51045 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
51068 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:51259 original size:12 final size:12
Alignment explanation
Indices: 51242--51266 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51232 ATATAATCCT
51242 GAAGAAGAAAAA
1 GAAGAAGAAAAA
51254 GAAGAAGAAAAA
1 GAAGAAGAAAAA
51266 G
1 G
51267 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:53570 original size:19 final size:19
Alignment explanation
Indices: 53548--53840 Score: 392
Period size: 19 Copynumber: 16.4 Consensus size: 19
53538 CGGAAAATAC
*
53548 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
53567 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
53581 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
53601 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
53615 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53634 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
53653 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
53667 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
53686 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53705 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53724 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53743 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53762 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53781 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
53795 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53814 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
53833 AATCGCAA
1 AATCGCAA
53841 CGAGATAATC
Statistics
Matches: 245, Mismatches: 8, Indels: 42
0.83 0.03 0.14
Matches are distributed among these distances:
14 38 0.16
15 1 0.00
16 14 0.06
17 12 0.05
18 2 0.01
19 165 0.67
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:53663 original size:52 final size:55
Alignment explanation
Indices: 53576--53862 Score: 356
Period size: 52 Copynumber: 5.4 Consensus size: 55
53566 AAATCCCAAC
*
53576 ATGAAAATCGCAATGCGGAAATGAAAATCGCAA-CG-A-GAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAAGCGAATGAAAATCGCAATGCGAA
53629 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-CGACA-G--AATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGA-ATGAAAATCGCAATGCGAA
*
53681 ATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAATGCGAA
53738 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAATGCGAA
53793 A-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAATGCGAA
*
53843 A-GATAATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGAAAT
53863 TATAAACGCA
Statistics
Matches: 222, Mismatches: 2, Indels: 21
0.91 0.01 0.09
Matches are distributed among these distances:
50 2 0.01
52 127 0.57
53 16 0.07
54 6 0.03
55 7 0.03
57 64 0.29
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (55 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAAATCGCAATGCGAA
Found at i:53759 original size:128 final size:128
Alignment explanation
Indices: 53548--53862 Score: 462
Period size: 128 Copynumber: 2.6 Consensus size: 128
53538 CGGAAAATAC
* *
53548 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCA
* *
53608 A--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAG
65 ATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
*
53667 AATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
53732 TGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
66 TGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
*
53795 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GATAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
53855 TGCGAAAT
66 TGCGAAAT
53863 TATAAACGCA
Statistics
Matches: 179, Mismatches: 7, Indels: 16
0.89 0.03 0.08
Matches are distributed among these distances:
119 24 0.13
121 1 0.01
123 34 0.19
124 17 0.09
125 2 0.01
126 2 0.01
127 1 0.01
128 98 0.55
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (128 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
TGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
Found at i:53913 original size:19 final size:19
Alignment explanation
Indices: 53869--53970 Score: 142
Period size: 19 Copynumber: 5.6 Consensus size: 19
53859 AAATTATAAA
53869 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
53888 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
53908 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
53924 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
53941 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
*
53960 CACATTGCGAT
1 CGCATTGCGAT
53971 AGTCATTTTT
Statistics
Matches: 74, Mismatches: 3, Indels: 11
0.84 0.03 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 35 0.47
20 19 0.26
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:53976 original size:19 final size:19
Alignment explanation
Indices: 53935--53978 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
53925 GTTGCGATTT
* **
53935 TCATTTCGCATTGCGATTT
1 TCATTTCACATTGCGATAG
53954 TCATTTCACATTGCGATAG
1 TCATTTCACATTGCGATAG
53973 TCATTT
1 TCATTT
53979 TTGCCTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (19 bp):
TCATTTCACATTGCGATAG
Found at i:54096 original size:14 final size:14
Alignment explanation
Indices: 54077--54113 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
54067 CATCAATTAC
54077 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
54091 ACAAATCATCTTTT
1 ACAAATCAACTTTT
54105 ACAAATCAA
1 ACAAATCAA
54114 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:56089 original size:14 final size:14
Alignment explanation
Indices: 56070--56126 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
56060 GCGAAATGAA
*
56070 AATCGCAACGACAG
1 AATCGCAACGAAAG
56084 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
56101 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
56117 AATCGCAACG
1 AATCGCAACG
56127 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:56097 original size:33 final size:33
Alignment explanation
Indices: 56051--56143 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
56041 GCGAAACCAA
*
56051 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
56084 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
56117 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
56144 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:56108 original size:19 final size:19
Alignment explanation
Indices: 56014--56148 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
56004 TAGTTTACTT
* *
56014 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
56034 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
56053 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
56072 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
56086 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
56105 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
56119 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
56138 TCGCAATGCGA
1 TCGCAACGCGA
56149 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:56166 original size:19 final size:19
Alignment explanation
Indices: 56144--56271 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
56134 AAAATCGCAA
56144 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
56163 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
56177 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
56196 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
56210 TGCGA-TTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
56228 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
56247 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
56267 TGCGA
1 TGCGA
56272 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
13 2 0.02
14 19 0.22
15 1 0.01
16 3 0.03
17 1 0.01
18 10 0.11
19 39 0.44
20 13 0.15
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:56186 original size:33 final size:33
Alignment explanation
Indices: 56144--56234 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
56134 AAAATCGCAA
56144 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
56177 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
56210 TGCGA-TTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
56235 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 18 0.33
33 35 0.64
34 2 0.04
ACGTcount: A:0.08, C:0.19, G:0.29, T:0.45
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:56484 original size:90 final size:93
Alignment explanation
Indices: 56315--56599 Score: 531
Period size: 93 Copynumber: 3.1 Consensus size: 93
56305 TTGAATGGAT
56315 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
56380 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
56408 AAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA-A-TATTTCACAGTGTTAAAGAATATAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
56470 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
56498 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
56563 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
56591 AAATTTACT
1 AAATTTACT
56600 AAGCAATCTA
Statistics
Matches: 186, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
90 86 0.46
91 3 0.02
92 3 0.02
93 94 0.51
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:58324 original size:14 final size:14
Alignment explanation
Indices: 58305--58394 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
58295 TTGAAATGAA
58305 AATCGCAACGAGAG
1 AATCGCAACGAGAG
58319 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
58336 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
58352 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
58371 AATCGCAACGAGAG
1 AATCGCAACGAGAG
58385 AATCGCAACG
1 AATCGCAACG
58395 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:58342 original size:33 final size:33
Alignment explanation
Indices: 58297--58411 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
58287 TCTTTTGGTT
58297 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
58330 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
58363 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
58396 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
58412 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:58343 original size:19 final size:18
Alignment explanation
Indices: 58304--58416 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
58294 GTTGAAATGA
58304 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
58319 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
58336 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
58352 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
58369 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
58385 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
58402 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
58417 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:58447 original size:14 final size:14
Alignment explanation
Indices: 58428--58482 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
58418 TTTGGTTTCG
58428 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
58442 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
58461 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
58475 CGTTGCGA
1 CGTTGCGA
58483 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:58460 original size:33 final size:33
Alignment explanation
Indices: 58412--58482 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
58402 AAAATCGCAA
**
58412 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
58445 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
58478 TGCGA
1 TGCGA
58483 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:58490 original size:33 final size:33
Alignment explanation
Indices: 58423--58504 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
58413 GCGATTTTGG
***
58423 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
58456 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
58489 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
58505 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:58509 original size:20 final size:20
Alignment explanation
Indices: 58435--58523 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
58425 TCGCGTTGCG
58435 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
58455 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
58468 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
58488 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
58508 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
58524 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:58645 original size:33 final size:33
Alignment explanation
Indices: 58603--58673 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
58593 AATACTAACT
*
58603 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
58636 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
58669 TGAAA
1 TGAAA
58674 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:58907 original size:22 final size:22
Alignment explanation
Indices: 58855--58909 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
58845 TGGTTGTGAG
**
58855 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
58877 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
58899 GGATTTCTTCG
1 GGATTTCTTCG
58910 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:59080 original size:20 final size:20
Alignment explanation
Indices: 59055--59247 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
59045 CTTTAAATAT
59055 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
59075 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
59097 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
59116 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
59136 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
59156 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
59176 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
59196 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
59216 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
59236 CGCGTTGCGATT
1 CGCGTTGCGATT
59248 ATGGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:59242 original size:60 final size:60
Alignment explanation
Indices: 59055--59247 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
59045 CTTTAAATAT
**
59055 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
59116 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
59176 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
59236 CGCGTTGCGATT
1 CGCGTTGCGATT
59248 ATGGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:59328 original size:20 final size:20
Alignment explanation
Indices: 59303--59354 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
59293 AAGAATCGCG
*
59303 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
59323 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
59343 TTGCGATTCTGG
1 TTGCGATTCTGG
59355 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:60902 original size:31 final size:31
Alignment explanation
Indices: 60867--60945 Score: 133
Period size: 31 Copynumber: 2.5 Consensus size: 31
60857 TTGCTTTGTT
*
60867 ATGTCCCTTGACTATTATAT-TTTTGAAGAAA
1 ATGTCCCTCGACTATTATATATTTT-AAGAAA
60898 ATGTCCCTCGACTATTATATATTTTAAGAAA
1 ATGTCCCTCGACTATTATATATTTTAAGAAA
60929 ATGTCCCTCGACTATTA
1 ATGTCCCTCGACTATTA
60946 CAAGTTACAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
31 42 0.91
32 4 0.09
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (31 bp):
ATGTCCCTCGACTATTATATATTTTAAGAAA
Found at i:61305 original size:59 final size:60
Alignment explanation
Indices: 61181--61314 Score: 150
Period size: 59 Copynumber: 2.2 Consensus size: 60
61171 AATCGGGAGA
* * * *
61181 CCATTTTGTAACTTTTAATAGTTGAGGGACTCAACAAATCAACTCTCTATAGTCGGAGGAT
1 CCATTTTGTAACTTTTAATAATCGAGGGACTCAACAAAACAACTCCCTATAGTC-GAGGAT
** *
61242 -CATTTTGTAACTTTTAATAATCG-TTGACTCAACAAAACAAGTCCCTATAGTC-AGGAT
1 CCATTTTGTAACTTTTAATAATCGAGGGACTCAACAAAACAACTCCCTATAGTCGAGGAT
61299 GCCATTTGTGT-ACTTT
1 -CCATTT-TGTAACTTT
61315 ACCCTAAATT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
57 5 0.08
59 34 0.54
60 24 0.38
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (60 bp):
CCATTTTGTAACTTTTAATAATCGAGGGACTCAACAAAACAACTCCCTATAGTCGAGGAT
Found at i:61844 original size:22 final size:22
Alignment explanation
Indices: 61792--61846 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
61782 CTCTCTACGG
*
61792 CGAAATCCATCCCCGTCTCCGA
1 CGAAATCCGTCCCCGTCTCCGA
61814 CGAAATCCGTCCCCGTCTCCGA
1 CGAAATCCGTCCCCGTCTCCGA
61836 CGAAATCCGTC
1 CGAAATCCGTC
61847 TATCTCCATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.22, C:0.44, G:0.16, T:0.18
Consensus pattern (22 bp):
CGAAATCCGTCCCCGTCTCCGA
Found at i:62257 original size:20 final size:20
Alignment explanation
Indices: 62220--62257 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62210 CGATTTTCTC
* *
62220 GTTGCGATTTTCATTTTCGA
1 GTTGCGATTTTAAGTTTCGA
62240 GTTGCGATTTTAAGTTTC
1 GTTGCGATTTTAAGTTTC
62258 AGAAATTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.13, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATTTTAAGTTTCGA
Found at i:63766 original size:42 final size:42
Alignment explanation
Indices: 63676--63774 Score: 119
Period size: 42 Copynumber: 2.4 Consensus size: 42
63666 CCCCCCACTT
* * *
63676 CGAGAGCCATCACCTGATCGAGTCGATTCTACAGCTCGACAC
1 CGAGAGCCATCACCTGATCGAGTCGATTATACACCTCGACAA
* *
63718 CCAGAGCCATCACCTGATCGAG-CTGATTATACACCTCTACAA
1 CGAGAGCCATCACCTGATCGAGTC-GATTATACACCTCGACAA
* *
63760 TGAGAGCTATCACCT
1 CGAGAGCCATCACCT
63775 ATTTCATCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 1 0.02
42 47 0.98
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.21
Consensus pattern (42 bp):
CGAGAGCCATCACCTGATCGAGTCGATTATACACCTCGACAA
Found at i:64099 original size:21 final size:21
Alignment explanation
Indices: 64075--64127 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
64065 GTCATCGTTG
64075 CAGAATGAGGTTCATACTTTA
1 CAGAATGAGGTTCATACTTTA
64096 CAGAATGAGGTTCATACTTTA
1 CAGAATGAGGTTCATACTTTA
*
64117 CAAAATGAGGT
1 CAGAATGAGGT
64128 AAGTTTGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (21 bp):
CAGAATGAGGTTCATACTTTA
Found at i:64202 original size:12 final size:12
Alignment explanation
Indices: 64176--64217 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
64166 TTTTTCGGCA
64176 TTATTTATTTG-T
1 TTATTTA-TTGAT
64188 TTATTTATTGAT
1 TTATTTATTGAT
* *
64200 TTATGTATTAAT
1 TTATTTATTGAT
64212 TTATTT
1 TTATTT
64218 TTAGCGGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (12 bp):
TTATTTATTGAT
Found at i:64402 original size:40 final size:43
Alignment explanation
Indices: 64358--64455 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 43
64348 CCGATCCACC
* *
64358 TATCATCGTTCAAGAGGCCCC-CT-ATCTTTCAAGAGG-CCCT
1 TATCACCGTTCAAGAGGCCCCTCTCATCGTTCAAGAGGCCCCT
*
64398 TATCACCGTTGAAGAGGCCCCTCTCATCGTTCAAGAGGCCCCT
1 TATCACCGTTCAAGAGGCCCCTCTCATCGTTCAAGAGGCCCCT
*
64441 CA-CACCGTTCAAGAG
1 TATCACCGTTCAAGAG
64456 ACCGATTCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 19 0.38
41 2 0.04
42 24 0.48
43 5 0.10
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (43 bp):
TATCACCGTTCAAGAGGCCCCTCTCATCGTTCAAGAGGCCCCT
Found at i:64414 original size:21 final size:21
Alignment explanation
Indices: 64385--64455 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
64375 CCCCCTATCT
64385 TTCAAGAGGCCCTTATCACCG
1 TTCAAGAGGCCCTTATCACCG
* * * *
64406 TTGAAGAGGCCCCTCTCATCG
1 TTCAAGAGGCCCTTATCACCG
*
64427 TTCAAGAGGCCCCTCA-CACCG
1 TTCAAGAGG-CCCTTATCACCG
64448 TTCAAGAG
1 TTCAAGAG
64456 ACCGATTCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
21 37 0.93
22 3 0.08
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (21 bp):
TTCAAGAGGCCCTTATCACCG
Found at i:66003 original size:20 final size:21
Alignment explanation
Indices: 65957--66003 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
65947 CGTTGCGATG
*
65957 GTTGCGAAAGTCAAATTCACA
1 GTTGCGAAAGTCAAATGCACA
**
65978 -ACGCGAAAGTCAAATGCA-A
1 GTTGCGAAAGTCAAATGCACA
65997 GTTGCGA
1 GTTGCGA
66004 TTTTCGTGTT
Statistics
Matches: 20, Mismatches: 5, Indels: 3
0.71 0.18 0.11
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (21 bp):
GTTGCGAAAGTCAAATGCACA
Found at i:66078 original size:29 final size:30
Alignment explanation
Indices: 66036--66109 Score: 105
Period size: 33 Copynumber: 2.4 Consensus size: 30
66026 TTCTCATTTC
*
66036 GAATTTGATTTTCGCAAC-AATCGCAACGT
1 GAATTTGACTTTCGCAACAAATCGCAACGT
66065 GAATTTGACTTTCGCAACAAAAAATCGCAACGT
1 GAATTTGACTTTCGCAAC---AAATCGCAACGT
66098 GAATTTGACTTT
1 GAATTTGACTTT
66110 TGCGTTGCGA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
29 17 0.43
33 23 0.57
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (30 bp):
GAATTTGACTTTCGCAACAAATCGCAACGT
Found at i:69627 original size:20 final size:18
Alignment explanation
Indices: 69583--69630 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
69573 CAAAATATTT
69583 GTGTTGCGAAAATAAAAC
1 GTGTTGCGAAAATAAAAC
* *
69601 CTGTTGCGAAATTAAAATTC
1 GTGTTGCGAAAATAAAA--C
69621 GTGTTGCGAA
1 GTGTTGCGAA
69631 TTCGAAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.60
20 10 0.40
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (18 bp):
GTGTTGCGAAAATAAAAC
Found at i:69673 original size:20 final size:20
Alignment explanation
Indices: 69624--69816 Score: 74
Period size: 20 Copynumber: 9.6 Consensus size: 20
69614 AAAATTCGTG
* *
69624 TTGCGAATTCGAAAATCG-A
1 TTGCGAATTTGGAAATCGCA
69643 GTTGCGAATTTGGAAATCGCA
1 -TTGCGAATTTGGAAATCGCA
** **
69664 TTGCGAATTT-GACTTCCGTG
1 TTGCGAATTTGGAAAT-CGCA
** **
69684 TTGCGAATTT-GACTTCTGTG
1 TTGCGAATTTGGAAATC-GCA
*
69704 TTGCGAATTTGGAAAATCACA
1 TTGCGAATTTGG-AAATCGCA
** *
69725 ACGCGAATTCGGAAAATCGCA
1 TTGCGAATTTGG-AAATCGCA
* ** *
69746 ATGCG-ATTTACATATTCGCA
1 TTGCGAATTTGGA-AATCGCA
69766 TTGCGAATTTGGAAA-CTG-A
1 TTGCGAATTTGGAAATC-GCA
* * * *
69785 GTTGCGAAATTAGAATTCGCG
1 -TTGCGAATTTGGAAATCGCA
69806 TTGCGAATTTG
1 TTGCGAATTTG
69817 TTGGTCATTT
Statistics
Matches: 132, Mismatches: 30, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
19 7 0.05
20 93 0.70
21 29 0.22
22 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (20 bp):
TTGCGAATTTGGAAATCGCA
Found at i:69732 original size:21 final size:21
Alignment explanation
Indices: 69706--69751 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
69696 CTTCTGTGTT
*
69706 GCGAATTTGGAAAATCACAAC
1 GCGAATTCGGAAAATCACAAC
* *
69727 GCGAATTCGGAAAATCGCAAT
1 GCGAATTCGGAAAATCACAAC
69748 GCGA
1 GCGA
69752 TTTACATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (21 bp):
GCGAATTCGGAAAATCACAAC
Found at i:72429 original size:972 final size:966
Alignment explanation
Indices: 70585--72519 Score: 3735
Period size: 972 Copynumber: 2.0 Consensus size: 966
70575 AGCCTAAAAT
70585 TCGAGCTTGATTGAAGTGAAAGAATAGTTCACTCAATGCTCACCAAAAGTCTCTATGATTTTGAA
1 TCGAGCTTGATTGAAGTGAAAGAATAGTTCACTCAATGCTCACCAAAAGTCTCTATGATTTTGAA
70650 TGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGTGATGCGCTTCTATGTTTCTTAGCAATGT
66 TGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGTGATGCGCTTCTATGTTTCTTAGCAATGT
*
70715 GAGATTGTTTTGTTCTCATATTTTTACTCTTTAGACTTTTAGGATGCTCTTCTATGTTTCTTAGC
131 GAGATTGTTTTGTTCTCATATTTTTACTCTTTAGACTTTTAGGATGCTCTTCTATGTATCTTAGC
70780 CATGTGAGATTGTTTTTAAAAAAAATTAAACCAAACAATATCATTTTGTTATGATTTTTTAACCT
196 CATGTGAGATTGTTTTTAAAAAAAATTAAACCAAACAATATCATTTTGTTATGATTTTTTAACCT
70845 CAAATTTATTTTTTAATTATAGTTATATAATTATATTTATTATTTAATATGTTTTATCTTAAATA
261 CAAATTTATTTTTTAATTATAGTTATATAATTATATTTATTATTTAATATGTTTTATCTTAAATA
*
70910 TTATGTTGTAGTTAATTTGAATCATTTTGTTTTACTTGATTTTATGGTTTTTAACTTATATATGT
326 TTATGTTGTAGTTAATTTGAATCATTTTGTTTCACTTGATTTTATGGTTTTTAACTTATATATGT
70975 TATGACTTGATTTTAATATGACTTGTGATATAAAAAATTATTTTTTATTAAATATTTTTGATATT
391 TATGACTTGATTTTAATATGACTTGTGATATAAAAAATTATTTTTTATTAAATATTTTTGATATT
71040 TTTATTTAATTTTTTAAATAATTATGACGTCGTCCGGTTCTTTTGACCGATCGAACAGATTTGAT
456 TTTATTTAATTTTTTAAATAATTATGACGTCGTCCGGTTCTTTTGACCGATCGAACAGATTTGAT
* *
71105 CGATTGAACCAATAAATTGATAGTATAACTGATTCGCTAACCAATCTGATTCTAAAAACATGATC
521 CGATTGAACCAATAAATCGATAGTATAACCGATTCGCTAACCAATCTGATTCTAAAAACATGATC
71170 ACAACATCAGCATGCACGTAAAGCCATGTGTAATTACAATACTCTAACCAAAACTCTGCTTTCCC
586 ACAACATCAGCATGCACGTAAAGCCATGTGTAATTACAATACTCTAACCAAAACTCTGCTTTCCC
71235 TCTGCTCCAAAGCCAGATCTTTTCTCCAAACCAAGCAAACTCACGCCTTCGCCATTCTCCATGGC
651 TCTGCTCCAAAGCCAGATCTTTTCTCCAAACCAAGCAAACTCACGCCTTCGCCATTCTCCATGGC
*
71300 CTCCTCCCCACCGACATTTCCCTCTCCGTCTCTCTCATTCTCCGCTAGGAGTGTAAACGTGCCGA
716 CTCCTCCCCACCGACATTTCCCTCTCCGCCTCTCTCATTCTCCGCTAGGAGTGTAAACGTGCCGA
*
71365 GTCGAATTCGAGTAGTGTTGAGCTCGACTCGATTCGAAAATTCTGAAATGAAGTTCGATTCGAAA
781 GTCGAATTCGAATAGTGTTGAGCTCGACTCGATTCGAAAATTCTGAAATGAAGTTCGATTCGAAA
71430 ACTCGCGATTTTAAAATTTTCAAACTCGACTCGAACTCAAAATCCTGAACTAAAGCTCTTGAGCA
846 ACTCGCGATTTTAAAATTTTCAAACTCGACTCGAACTCAAAATCCTGAACTAAAGCTCTTGAGCA
*
71495 GATCGAAAATGCTCAAAATGAAGAAAAAAAATTCTTAAACTCAACTCTCAAACTCGAC
911 GATCGAAAATGCTCAAAAT-AA-AAAAAAAAATCTTAAACTCAACTCTCAAACTCGAC
71553 TCGAGCTTGATTGAAGTGAAAGAATAGTTCACTCAATGCTCACCAAAAGTCTCTATGATTTTGAA
1 TCGAGCTTGATTGAAGTGAAAGAATAGTTCACTCAATGCTCACCAAAAGTCTCTATGATTTTGAA
71618 TGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGTGATGCGCTTCTATGTTTCTTAGCAATGT
66 TGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGTGATGCGCTTCTATGTTTCTTAGCAATGT
*
71683 GAGATTGTTTTGTTCTCATATTTTTACTCTTTAGACTTTTGGGATGCTCTTCTATGTATCTTAGC
131 GAGATTGTTTTGTTCTCATATTTTTACTCTTTAGACTTTTAGGATGCTCTTCTATGTATCTTAGC
71748 CATGTGAGATTGTTTTTAAAAAAAAAAATTAAACCAAACAATATCATTTTGTTATGATTTTTTTA
196 CATGTGAGATTGTTTTT---AAAAAAAATTAAACCAAACAATATCATTTTGTTATGA-TTTTTTA
71813 ACCTCAAATTTATTTTTTAATTATAGTTATATAATTATATTTATTATTTAATATGTTTTATCTTA
257 ACCTCAAATTTATTTTTTAATTATAGTTATATAATTATATTTATTATTTAATATGTTTTATCTTA
71878 AATATTATGTTGTAGTTAATTTGAATCATTTTGTTTCACTTGATTTTATGGTTTTTAACTTATAT
322 AATATTATGTTGTAGTTAATTTGAATCATTTTGTTTCACTTGATTTTATGGTTTTTAACTTATAT
71943 ATGTTATGACTTGATTTTAATATGACTTGTGATATAAAAAATTATTTTTTATTAAATATTTTTGA
387 ATGTTATGACTTGATTTTAATATGACTTGTGATATAAAAAATTATTTTTTATTAAATATTTTTGA
72008 TATTTTTATTTAATTTTTTAAATAATTATGACGTCGTCCGGTTCTTTTGACCGATCGAACAGATT
452 TATTTTTATTTAATTTTTTAAATAATTATGACGTCGTCCGGTTCTTTTGACCGATCGAACAGATT
*
72073 TGATCGATTGAACCAGTAAATCGATAGTATAACCGATTCGCTAACCAATCTGATTCTAAAAACAT
517 TGATCGATTGAACCAATAAATCGATAGTATAACCGATTCGCTAACCAATCTGATTCTAAAAACAT
72138 GATCACAACATCAGCATGCACGTAAAGCCATGTGTAATTACAATACTCTAACCAAAACTCTGCTT
582 GATCACAACATCAGCATGCACGTAAAGCCATGTGTAATTACAATACTCTAACCAAAACTCTGCTT
72203 TCCCTCTGCTCCAAAGCCAGATCTTTTCTCCAAACCAAGCAAACTCACGCCTTCGCCATTCTCCA
647 TCCCTCTGCTCCAAAGCCAGATCTTTTCTCCAAACCAAGCAAACTCACGCCTTCGCCATTCTCCA
72268 TGGCCTCCTCCCCACCGACATTTCCCTCTCCGCCTCTCTCATTCTCCGCTAGGAGTGTAAACGTG
712 TGGCCTCCTCCCCACCGACATTTCCCTCTCCGCCTCTCTCATTCTCCGCTAGGAGTGTAAACGTG
72333 CCGAGTCGAATTCGAATAGTGTTGAGCTCGACTCGATTCGAAAATTCTGAAATGAAGTTCGATTC
777 CCGAGTCGAATTCGAATAGTGTTGAGCTCGACTCGATTCGAAAATTCTGAAATGAAGTTCGATTC
72398 GAAAACTCGCGATTTTAAAATTTTCAAACTCGACTCGAACTCAAAATCCTGAACTAAAGCTCTTG
842 GAAAACTCGCGATTTTAAAATTTTCAAACTCGACTCGAACTCAAAATCCTGAACTAAAGCTCTTG
72463 AGCAGATCGAAAATGCTCAAAATAAAAAAAAAAATCTTAAACTCAACTCTCAAACTC
907 AGCAGATCGAAAATGCTCAAAATAAAAAAAAAAATCTTAAACTCAACTCTCAAACTC
72520 AAACCTTAAA
Statistics
Matches: 954, Mismatches: 9, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
968 210 0.22
970 31 0.03
971 39 0.04
972 674 0.71
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (966 bp):
TCGAGCTTGATTGAAGTGAAAGAATAGTTCACTCAATGCTCACCAAAAGTCTCTATGATTTTGAA
TGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGTGATGCGCTTCTATGTTTCTTAGCAATGT
GAGATTGTTTTGTTCTCATATTTTTACTCTTTAGACTTTTAGGATGCTCTTCTATGTATCTTAGC
CATGTGAGATTGTTTTTAAAAAAAATTAAACCAAACAATATCATTTTGTTATGATTTTTTAACCT
CAAATTTATTTTTTAATTATAGTTATATAATTATATTTATTATTTAATATGTTTTATCTTAAATA
TTATGTTGTAGTTAATTTGAATCATTTTGTTTCACTTGATTTTATGGTTTTTAACTTATATATGT
TATGACTTGATTTTAATATGACTTGTGATATAAAAAATTATTTTTTATTAAATATTTTTGATATT
TTTATTTAATTTTTTAAATAATTATGACGTCGTCCGGTTCTTTTGACCGATCGAACAGATTTGAT
CGATTGAACCAATAAATCGATAGTATAACCGATTCGCTAACCAATCTGATTCTAAAAACATGATC
ACAACATCAGCATGCACGTAAAGCCATGTGTAATTACAATACTCTAACCAAAACTCTGCTTTCCC
TCTGCTCCAAAGCCAGATCTTTTCTCCAAACCAAGCAAACTCACGCCTTCGCCATTCTCCATGGC
CTCCTCCCCACCGACATTTCCCTCTCCGCCTCTCTCATTCTCCGCTAGGAGTGTAAACGTGCCGA
GTCGAATTCGAATAGTGTTGAGCTCGACTCGATTCGAAAATTCTGAAATGAAGTTCGATTCGAAA
ACTCGCGATTTTAAAATTTTCAAACTCGACTCGAACTCAAAATCCTGAACTAAAGCTCTTGAGCA
GATCGAAAATGCTCAAAATAAAAAAAAAAATCTTAAACTCAACTCTCAAACTCGAC
Done.