Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005020.1 Hibiscus syriacus cultivar Beakdansim tig00011266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64791

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2523--2785
135
1.9
136
85
5
363
28
13
14
43
1.83
4573--4630
18
3.4
18
72
18
70
34
6
18
39
1.78
4566--4656
32
2.8
32
94
1
155
32
5
19
41
1.75
4591--4644
14
3.6
14
72
18
54
35
3
20
40
1.70
8400--8451
19
2.7
19
73
11
52
44
5
3
46
1.45
9676--9704
2
14.5
2
100
0
58
51
0
0
48
1.00
11114--11194
30
2.7
30
86
0
108
64
8
9
17
1.48
12835--13186
131
2.7
132
82
3
413
23
17
32
26
1.96
13190--13320
67
2.0
66
85
5
176
38
13
21
25
1.90
14694--14742
16
3.0
16
87
3
62
0
14
4
81
0.83
14697--14760
24
2.7
24
82
4
76
1
14
7
76
1.07
14696--14745
12
4.1
11
82
17
55
0
14
4
82
0.82
16720--16853
69
1.9
69
98
0
259
31
8
21
38
1.83
16884--16925
19
2.2
19
87
8
59
64
7
4
23
1.38
17678--17754
30
2.6
29
89
2
118
58
9
11
20
1.60
22555--22610
21
2.7
21
85
0
76
26
33
26
12
1.92
41212--41397
32
5.8
32
82
2
203
31
19
12
36
1.89
41212--41413
64
3.2
64
79
1
226
29
19
12
38
1.89
41183--41417
32
7.3
32
80
0
193
30
19
11
38
1.88
41180--41427
96
2.6
95
77
6
248
31
18
12
37
1.87
43418--43463
3
16.0
3
82
8
51
36
0
0
63
0.95
43418--43463
14
3.4
14
82
5
60
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45041--45066
2
13.0
2
100
0
52
50
0
0
50
1.00
45041--45083
14
3.2
14
83
9
54
48
6
0
44
1.29
49274--49329
24
2.3
24
78
9
60
26
7
7
58
1.50
52113--52337
104
2.2
103
85
2
299
36
23
15
25
1.94
54167--54226
2
30.0
2
100
0
120
50
0
0
50
1.00
54388--54430
16
2.6
16
81
3
50
32
4
6
55
1.47
62594--62678
3
28.3
3
92
0
125
70
2
0
27
0.99
62893--63476
135
4.4
135
82
5
615
32
14
20
32
1.93
64670--64739
13
5.5
12
75
10
59
5
14
0
80
0.89
64682--64739
9
7.1
8
73
23
50
5
13
0
81
0.86
64683--64752
22
3.1
22
77
20
74
5
15
0
78
0.93

Tables:   1

The End!