genome.fa.s5021.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005021.1 Hibiscus syriacus cultivar Beakdansim tig00011271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84293

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9660--9700	5	8.2	5	100	0	82	0	19	0	80	0.71
12151--12193	15	2.8	16	78	3	52	53	4	6	34	1.49
17278--17328	19	2.7	19	82	8	61	76	3	15	3	1.08
24923--24958	16	2.4	16	90	9	58	5	13	2	77	1.05
27956--28212	45	5.7	45	93	2	428	20	24	11	43	1.84
27956--28212	91	2.9	90	93	2	428	20	24	11	43	1.84
28588--28787	95	2.1	95	85	5	262	25	24	12	38	1.90
32069--32124	26	2.2	26	96	0	103	26	28	5	39	1.78
34980--35019	19	2.0	20	90	4	64	20	15	0	65	1.28
40894--40963	16	4.6	16	75	24	71	81	1	17	0	0.77
40894--40962	14	4.5	15	79	20	81	81	1	17	0	0.77
40894--40965	29	2.5	28	80	8	83	81	1	16	0	0.75
40900--40964	12	5.7	12	77	22	77	81	1	16	0	0.77
40895--40957	5	12.8	5	75	21	62	80	1	17	0	0.78
40894--40965	21	3.2	21	88	11	108	81	1	16	0	0.75
43745--43822	35	2.2	37	90	4	124	30	37	3	28	1.75
47094--47172	35	2.2	37	88	4	117	32	36	2	27	1.71
47872--48007	37	3.8	36	84	5	168	40	13	14	30	1.86
51024--51065	16	2.8	16	83	16	54	80	4	11	2	0.95
51030--51121	7	12.7	7	72	17	64	78	6	13	2	1.04
51024--51107	15	5.7	15	76	16	54	77	7	14	1	1.04
51058--51131	23	3.2	23	78	14	64	75	8	14	1	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51746--51794	22	2.2	22	96	0	89	34	22	14	28	1.93
52210--52245	18	2.0	18	88	0	54	16	8	36	38	1.79
52382--52440	29	2.0	29	100	0	118	35	13	27	23	1.92
52614--52748	36	3.8	37	74	7	100	25	20	15	39	1.91
52794--52868	36	2.1	35	90	2	114	26	21	13	38	1.90
52802--52879	36	2.2	36	88	0	111	30	21	15	32	1.94
53218--53400	64	2.8	65	93	3	307	35	26	19	19	1.95
53121--53571	235	1.9	230	92	3	762	35	26	18	19	1.95
53286--53621	171	2.0	171	96	0	620	34	26	19	20	1.96
53455--53614	65	2.5	66	87	6	222	34	26	19	19	1.96
53350--53551	106	1.9	104	86	6	255	36	26	18	18	1.94
54132--54267	37	3.8	36	84	5	168	40	13	14	30	1.86
57804--57882	35	2.2	37	90	4	126	31	36	3	27	1.75
61740--61818	35	2.2	37	90	4	126	31	36	3	27	1.75
64681--64793	36	3.2	36	92	1	174	32	36	3	27	1.74
64681--64779	13	8.3	11	71	23	67	31	36	3	29	1.73
64693--64832	36	4.1	33	83	9	97	30	36	2	30	1.72
66351--66402	21	2.6	21	90	6	81	32	13	7	46	1.72
67146--67179	13	2.8	13	86	13	54	79	0	20	0	0.73
70447--70498	21	2.6	21	90	6	81	32	13	7	46	1.72
71163--71209	14	3.1	15	75	12	51	72	6	19	2	1.17
74656--74768	36	3.2	36	92	1	174	32	36	3	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74656--74754	13	8.3	11	71	23	67	31	36	3	29	1.73
74668--74807	36	4.1	33	83	9	97	30	36	2	30	1.72
75337--75373	8	4.6	8	100	0	74	0	24	0	75	0.80
75327--75373	24	2.0	24	87	8	69	0	25	0	74	0.82
75337--75376	3	14.7	3	80	19	52	0	25	0	75	0.81
75337--75378	11	3.6	11	77	22	50	0	23	0	76	0.79
77593--77633	20	2.1	20	90	4	66	26	14	4	53	1.61
83516--83581	17	4.1	16	73	21	50	15	18	0	66	1.25
83746--83792	22	2.1	22	84	7	60	74	4	19	2	1.09
83754--83796	21	2.0	21	86	8	61	76	0	20	2	0.89

Tables:   1

The End!