genome.fa.s5023.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005023.1 Hibiscus syriacus cultivar Beakdansim tig00011273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46824

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2131--2610	213	2.2	214	80	6	524	33	25	14	26	1.94
8783--8878	44	2.2	44	92	0	165	62	5	11	20	1.48
8802--8878	21	3.5	23	69	24	58	61	5	11	22	1.50
8802--8870	21	3.2	21	70	22	70	60	4	11	23	1.48
9793--9832	5	7.8	5	85	2	53	15	2	5	77	1.04
12411--12504	26	3.6	25	78	16	91	47	5	3	43	1.41
12411--12504	30	3.5	27	82	13	106	47	5	3	43	1.41
12398--12504	54	1.9	56	83	7	139	49	5	2	42	1.41
12488--12665	2	86.0	2	66	20	73	44	5	3	46	1.43
12433--12553	30	3.7	34	77	15	105	44	5	4	45	1.46
12488--12630	33	4.2	34	70	16	100	43	4	4	46	1.46
12681--12733	27	2.0	27	84	0	70	45	3	5	45	1.45
12691--12745	27	2.0	27	89	0	83	40	5	5	49	1.49
12693--12757	27	2.4	27	84	0	76	40	4	4	50	1.43
12726--12760	15	2.4	15	90	4	54	42	5	2	48	1.41
12814--12898	29	2.8	29	80	7	80	44	8	3	43	1.51
12862--12918	25	2.3	24	77	14	62	36	7	7	49	1.57
12878--13078	25	7.8	26	71	19	136	42	5	4	46	1.50
12878--13064	27	7.2	27	71	20	75	42	5	5	45	1.51
12887--13032	52	2.8	51	70	12	118	43	5	4	45	1.48
12887--13078	2	93.0	2	65	24	53	43	5	4	46	1.48
13150--13232	20	4.1	20	69	20	55	49	7	2	40	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14046--14093	16	3.1	16	76	11	55	45	8	2	43	1.45
14211--14278	18	3.6	18	77	13	57	41	13	4	41	1.64
14779--14811	14	2.4	14	94	0	57	57	9	6	27	1.53
15020--15065	16	2.9	16	73	0	56	36	13	19	30	1.90
28260--28330	3	23.7	3	88	5	63	56	0	0	43	0.99
28568--28633	36	1.9	35	81	9	82	22	22	10	43	1.84
28670--29535	113	7.7	113	96	0	1473	27	20	15	36	1.93
29562--29743	76	2.4	76	90	1	285	32	20	20	25	1.97
30418--30494	22	3.5	22	92	0	136	40	15	11	32	1.84
30865--30960	50	1.9	50	84	0	129	27	22	12	37	1.90
33107--33331	114	2.0	114	90	1	353	31	20	16	32	1.95
35313--35456	72	2.0	72	90	0	225	34	18	20	25	1.96
38271--38342	36	2.0	36	86	0	99	23	15	22	38	1.92
41303--41387	3	28.7	3	83	7	66	61	0	0	38	0.96
41319--41365	18	2.6	18	93	0	76	53	0	0	46	1.00
41318--41371	21	2.6	21	90	0	90	55	0	0	44	0.99
45328--45370	2	22.0	2	95	4	79	51	0	0	48	1.00

Tables:   1

The End!