genome.fa.s5026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005026.1 Hibiscus syriacus cultivar Beakdansim tig00011280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66343

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2186--2254	22	3.3	21	81	16	74	44	0	2	52	1.16
2202--2254	22	2.5	22	88	8	76	45	0	0	54	0.99
2920--2956	19	1.9	19	88	0	56	40	5	0	54	1.24
4169--4217	21	2.5	19	87	9	64	30	14	20	34	1.92
4750--5197	49	9.1	49	79	3	461	33	13	22	31	1.92
4727--5197	98	4.8	98	89	1	674	33	13	21	30	1.92
4727--5197	197	2.4	195	89	2	701	33	13	21	30	1.92
5195--5297	46	2.2	46	82	0	125	41	13	21	23	1.88
10215--10282	22	3.1	22	97	0	127	45	2	23	27	1.67
10964--11137	49	3.5	49	78	1	186	33	12	22	31	1.91
10965--11155	99	1.9	98	88	1	283	34	12	21	30	1.91
11075--11235	83	1.9	84	87	1	234	36	13	22	27	1.92
10976--11332	182	2.0	182	84	3	477	35	13	22	29	1.92
11168--11382	49	4.3	49	78	1	205	33	13	22	30	1.92
11158--11382	99	2.3	98	87	3	308	34	13	22	29	1.92
19833--19891	15	3.9	15	81	0	64	37	20	6	35	1.79
25958--25991	17	2.1	17	88	5	52	29	14	8	47	1.75
26708--26959	83	3.0	82	84	3	310	32	19	17	31	1.95
26545--26959	41	10.1	41	72	11	224	31	19	18	31	1.95
35333--35456	29	4.4	28	75	6	106	41	22	8	27	1.82
35471--35512	13	3.3	13	86	6	68	16	21	45	16	1.86
35491--35544	18	3.0	18	94	0	99	16	16	48	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35475--35511	12	2.9	13	88	8	58	18	18	45	16	1.85
35547--35601	10	5.6	10	85	10	78	34	29	21	14	1.93
35547--35602	19	2.9	19	87	10	78	33	28	21	16	1.95
35626--35651	9	2.9	9	100	0	52	0	23	57	19	1.40
42662--42786	29	4.3	29	75	4	101	40	23	8	28	1.82
42801--42855	13	4.3	13	86	4	67	20	18	43	18	1.88
42872--42926	10	5.6	10	85	10	78	34	29	21	14	1.93
42872--42927	19	2.9	19	87	10	78	33	28	21	16	1.95
43501--43567	25	2.7	24	76	4	71	31	22	19	26	1.98
43706--43758	15	3.6	14	82	7	61	32	18	7	41	1.79
45848--45893	4	11.5	4	100	0	92	73	0	26	0	0.83
46452--46491	20	2.0	21	90	5	64	35	7	25	32	1.84
46483--46534	20	2.6	20	78	0	59	36	13	21	28	1.91
47371--47461	46	2.0	46	91	0	146	28	19	25	26	1.99
47371--47461	23	4.0	23	86	0	128	28	19	25	26	1.99
49019--49059	21	2.0	21	85	9	57	46	19	2	31	1.63
49750--49788	19	2.2	17	86	9	51	25	20	0	53	1.45
53543--53645	36	2.9	36	91	0	170	27	15	14	42	1.86
61062--61158	36	2.7	36	95	0	167	25	17	15	41	1.89
65890--65934	11	4.1	11	85	8	56	82	0	17	0	0.68
65879--65938	25	2.4	25	81	10	70	78	5	16	0	0.92
65891--65929	10	3.9	10	83	9	53	82	0	17	0	0.68

Tables:   1

The End!