genome.fa.s5027.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005027.1 Hibiscus syriacus cultivar Beakdansim tig00011281_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192700

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3666--3722	18	2.9	19	80	19	64	29	33	17	19	1.95
3667--3756	44	2.2	41	84	11	114	30	32	21	16	1.95
3685--3757	22	3.4	21	87	9	96	30	31	23	15	1.95
10551--10605	22	2.5	22	90	0	92	29	32	23	14	1.94
18502--18561	23	2.7	23	86	2	86	18	33	23	25	1.97
21259--21319	21	2.9	21	97	0	113	27	34	24	13	1.93
27646--27679	5	6.8	5	96	0	59	0	76	0	23	0.79
32645--32683	3	13.0	3	83	0	51	38	0	58	2	1.12
33873--33920	25	2.0	25	87	4	71	31	12	6	50	1.65
38709--38737	2	14.5	2	100	0	58	48	0	0	51	1.00
41013--41099	45	1.9	45	83	4	113	31	8	9	51	1.62
41526--41592	28	2.4	28	76	0	80	37	32	5	23	1.79
42588--43042	226	2.0	220	92	3	759	40	19	12	27	1.88
46860--46970	20	5.8	20	71	10	83	31	28	15	24	1.95
49557--49615	30	2.0	30	90	3	93	37	6	11	44	1.68
49917--49956	21	1.9	21	90	10	64	35	40	12	12	1.81
53484--53511	14	2.0	14	100	0	56	57	7	0	35	1.26
61839--61883	20	2.3	20	96	3	83	24	17	20	37	1.93
62694--62732	20	2.0	20	94	0	69	38	0	5	56	1.22
65048--65098	20	2.5	20	90	0	75	19	11	21	47	1.81
65413--65437	12	2.1	12	100	0	50	32	16	16	36	1.90
66707--66742	18	1.9	19	88	5	56	58	16	5	19	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67953--68002	21	2.4	21	96	0	91	12	8	38	42	1.71
67947--68004	21	2.4	24	75	24	68	10	10	39	39	1.74
75304--75364	23	2.7	23	86	0	95	26	26	27	19	1.99
75587--75646	31	2.0	31	90	9	97	38	23	1	36	1.65
80392--80426	18	1.9	18	88	0	52	5	51	2	40	1.40
80389--80419	12	2.6	12	100	0	62	6	51	0	41	1.27
82255--82306	23	2.3	23	86	0	77	28	26	25	19	1.98
82538--82597	31	2.0	30	87	9	86	36	25	1	36	1.66
85805--85854	18	2.8	18	96	0	91	18	24	34	24	1.96
88273--88474	75	2.7	75	85	1	262	41	12	19	27	1.87
89162--89207	17	2.8	17	83	12	51	36	2	0	60	1.09
91057--91524	235	2.0	235	99	0	920	24	17	25	32	1.97
102290--102330	11	3.8	11	78	18	50	29	2	0	68	1.03
102490--102535	16	3.1	14	82	17	58	39	0	2	58	1.10
102490--102538	14	3.5	13	77	20	53	38	0	2	59	1.09
102617--102676	32	1.9	30	83	12	77	56	1	8	33	1.39
104442--104471	2	15.0	2	100	0	60	50	0	0	50	1.00
107700--107726	2	13.5	2	100	0	54	51	0	0	48	1.00
107772--107844	31	2.3	32	83	2	94	32	9	16	41	1.81
107912--107981	31	2.3	31	80	5	79	54	5	10	30	1.57
110514--110544	15	2.0	16	93	6	55	58	0	3	38	1.15
111466--111541	38	2.0	38	100	0	152	52	13	10	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127981--128024	7	6.3	7	100	0	88	13	0	0	86	0.57
132905--133029	31	4.0	31	93	2	198	20	19	22	37	1.94
137573--137748	75	2.3	76	86	2	239	22	23	30	23	1.99
146706--146911	75	2.8	75	85	5	274	20	24	31	23	1.98
153041--153102	21	2.8	21	83	11	63	22	38	24	14	1.91
154716--154744	12	2.4	12	100	0	58	27	31	41	0	1.56
155045--155117	23	3.1	23	76	17	62	17	1	24	56	1.49
156580--156743	76	2.1	77	87	2	240	40	5	9	44	1.61
156683--156721	19	2.1	19	95	0	69	33	5	20	41	1.74
156919--156943	2	12.5	2	100	0	50	48	0	0	52	1.00
157406--157442	18	2.1	18	95	5	67	43	27	0	29	1.55
157410--157452	18	2.4	18	84	7	52	41	27	0	30	1.56
157500--157546	24	1.9	24	83	12	60	46	0	0	53	1.00
157549--157590	16	2.6	16	82	10	50	61	4	0	33	1.17
158667--158711	15	3.0	15	87	6	65	35	0	0	64	0.94
160149--160535	212	1.8	210	92	3	665	32	14	14	38	1.86
160310--160817	257	1.9	263	90	5	812	27	13	20	39	1.89
161170--161218	18	2.7	18	93	0	80	30	24	4	40	1.74
172518--172559	20	2.1	20	100	0	84	40	9	23	26	1.85
173071--173341	75	3.5	76	82	5	325	16	8	35	39	1.79
173071--173341	78	3.6	74	81	5	285	16	8	35	39	1.79
173225--173453	113	2.0	115	86	5	322	20	7	31	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173150--173515	190	1.9	188	83	8	467	19	7	32	40	1.80
173341--173512	76	2.3	75	82	4	204	20	7	30	41	1.80
177915--177965	25	2.0	25	96	0	93	23	7	29	39	1.83
183117--183170	23	2.3	24	83	6	74	16	14	24	44	1.85
183977--184021	17	2.6	17	80	13	56	35	0	2	62	1.08
184033--184081	25	2.0	25	95	0	89	36	4	2	57	1.30
188786--188887	29	3.0	37	71	24	105	30	18	12	38	1.88
188819--188877	29	2.0	29	100	0	118	30	20	10	38	1.86
189560--189645	29	2.8	31	82	8	106	58	5	4	31	1.42

Tables:   1

The End!