genome.fa.s503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000503.1 Hibiscus syriacus cultivar Beakdansim tig00000960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93691

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2961--3021	24	2.5	24	94	0	113	18	42	11	27	1.84
15932--16014	41	2.0	41	88	0	121	36	6	10	46	1.63
18554--18582	13	2.1	14	93	6	51	62	3	20	13	1.46
26003--26044	17	2.5	17	96	0	75	14	19	26	40	1.89
31885--31920	18	2.1	18	89	5	56	58	2	0	38	1.13
31880--31924	18	2.4	18	81	7	54	51	2	2	44	1.26
34305--34346	18	2.3	19	80	12	52	54	2	2	40	1.26
34467--34549	39	2.1	41	84	6	109	45	26	4	22	1.72
36154--36213	15	3.8	15	72	20	50	33	0	3	63	1.11
36173--36246	15	4.7	15	70	18	51	39	0	0	60	0.97
36165--36249	35	2.5	34	84	9	111	40	0	1	58	1.05
37976--38023	21	2.3	21	85	0	60	25	39	12	22	1.89
38029--38120	21	4.4	21	89	5	132	19	32	27	20	1.97
38643--38726	39	2.1	39	91	2	132	59	3	0	36	1.15
38671--38745	33	2.2	34	85	2	98	57	2	2	37	1.27
38861--38890	14	2.1	14	93	0	51	60	10	0	30	1.30
39145--40151	128	7.9	128	94	1	1690	31	20	25	23	1.98
39145--40151	381	2.6	383	94	1	1749	31	20	25	23	1.98
39145--40144	509	2.0	508	93	1	1736	31	20	25	23	1.98
40222--40262	8	5.2	8	82	5	57	36	29	0	34	1.58
44543--44599	16	3.5	16	83	9	71	38	0	3	57	1.16
44543--44586	17	2.7	16	89	6	70	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46658--46688	12	2.6	12	89	0	53	35	22	32	9	1.87
53832--53894	31	2.0	31	90	0	99	26	33	9	30	1.88
71463--71626	78	2.1	78	82	4	195	21	25	18	33	1.97
79205--79275	21	3.3	22	70	20	60	30	23	18	26	1.97
79214--79313	21	4.7	21	71	11	78	31	27	18	24	1.97
79209--79313	43	2.5	43	78	4	106	30	26	18	24	1.98
79379--79463	41	2.1	41	100	0	170	30	16	9	43	1.79
79864--80006	54	2.6	54	91	2	234	30	23	18	27	1.98
84483--84619	73	1.9	72	90	1	220	26	16	22	34	1.95
85765--85796	2	16.0	2	100	0	64	50	0	0	50	1.00
86200--86271	21	3.4	22	70	12	69	30	23	18	27	1.97
86209--86308	21	4.7	22	73	18	79	32	29	17	22	1.96
86441--86487	21	2.3	20	85	3	58	36	17	6	40	1.75
86812--86954	54	2.6	54	91	2	234	30	23	18	27	1.98
89639--89681	19	2.3	19	80	11	54	13	18	0	67	1.23
90527--90565	20	1.9	21	89	5	62	51	0	0	48	1.00
91353--91381	2	14.5	2	100	0	58	0	48	0	51	1.00

Tables:   1

The End!