genome.fa.s5031.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005031.1 Hibiscus syriacus cultivar Beakdansim tig00011290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  257035

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2783--2807	12	2.1	12	100	0	50	84	8	0	8	0.79
9070--9125	11	4.8	11	74	20	51	78	3	16	1	0.97
18079--18127	23	2.1	23	100	0	98	26	4	20	48	1.67
22735--22783	19	2.5	20	78	21	59	24	8	0	67	1.18
23045--23096	19	2.7	19	80	16	63	78	5	15	0	0.92
24074--24116	22	2.0	23	86	9	63	58	9	16	16	1.63
26450--26500	20	2.6	20	90	3	77	35	15	5	43	1.71
26913--26961	18	2.5	21	81	18	61	24	6	0	69	1.11
26909--26961	13	4.4	12	75	17	56	24	5	0	69	1.09
32353--32413	30	1.9	33	84	15	85	16	26	0	57	1.39
38435--38472	13	2.9	13	88	0	58	0	21	0	78	0.74
49586--49634	13	3.7	13	78	13	55	83	0	14	2	0.73
49596--49638	16	2.6	17	82	10	54	83	0	13	2	0.74
61507--61541	12	3.0	12	87	4	54	11	14	8	65	1.46
63142--63179	12	3.2	12	96	0	67	57	0	31	10	1.32
63142--63179	6	6.3	6	87	0	58	57	0	31	10	1.32
64190--64225	15	2.4	15	90	0	54	44	0	5	50	1.25
64343--64426	42	2.0	42	100	0	168	26	16	14	42	1.86
65866--65905	19	2.2	19	86	4	55	60	12	15	12	1.60
68496--68531	15	2.4	15	90	0	54	44	0	5	50	1.25
68648--68731	42	2.0	42	100	0	168	26	16	14	42	1.86
71458--71509	24	2.2	24	93	6	88	38	15	21	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73397--73607	79	2.6	79	78	5	208	29	18	9	42	1.83
73634--73689	28	2.0	28	96	0	103	25	17	12	44	1.84
76520--76623	33	3.1	33	82	9	95	30	36	1	30	1.69
82055--82158	33	3.1	33	82	9	95	30	36	1	30	1.69
87587--87690	33	3.1	33	82	9	95	30	36	1	30	1.69
91001--91104	33	3.1	33	82	9	95	30	36	1	30	1.69
95097--95149	12	4.2	13	81	11	65	20	13	0	66	1.25
100771--100832	27	2.2	28	78	13	74	59	11	17	11	1.60
107922--107974	23	2.2	24	90	3	81	9	16	11	62	1.54
130897--130958	28	2.2	28	83	8	74	6	8	11	74	1.22
130915--130978	8	6.8	9	75	19	51	1	6	14	78	1.02
133368--133815	238	1.9	238	88	4	690	25	29	9	35	1.87
135139--135207	33	2.1	33	83	5	86	31	1	36	30	1.67
139606--139674	33	2.1	33	83	5	86	31	1	36	30	1.67
141562--141611	19	2.6	19	79	17	59	66	0	18	16	1.26
142020--142071	19	2.6	21	90	6	81	46	5	13	34	1.67
145347--145398	21	2.6	21	90	6	81	34	13	5	46	1.67
152917--153576	330	2.0	329	93	1	1142	28	23	9	37	1.87
153668--153725	10	5.8	10	76	8	55	82	3	12	1	0.86
153668--153725	15	3.5	16	75	22	57	82	3	12	1	0.86
155386--155417	16	2.0	16	93	0	55	43	3	21	31	1.68
158924--158955	16	2.0	16	93	0	55	43	3	21	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159341--159390	25	2.0	25	100	0	100	28	28	12	32	1.92
162484--162515	16	2.0	16	93	0	55	43	3	21	31	1.68
165560--165611	21	2.6	21	90	6	81	34	13	5	46	1.67
168228--168279	19	2.6	21	90	6	81	46	5	13	34	1.67
169773--169820	8	5.9	9	95	4	61	0	22	0	77	0.78
169782--169820	4	9.8	4	100	0	78	0	23	0	76	0.78
172497--172526	15	2.0	15	93	0	51	16	26	0	56	1.40
173656--173720	13	5.4	12	75	21	57	29	3	35	32	1.73
173625--173753	36	3.7	36	86	4	156	31	3	34	30	1.76
180419--180455	2	19.0	2	88	5	58	45	0	0	54	1.00
181809--181861	15	3.7	15	80	12	58	15	20	0	64	1.29
182698--182769	20	3.6	20	94	3	119	47	5	12	34	1.65
183657--183716	30	2.0	31	86	3	86	55	8	8	28	1.59
186144--186168	8	3.1	8	100	0	50	0	24	0	76	0.80
186909--186947	20	2.0	20	100	0	78	48	5	10	35	1.59
187660--187719	30	2.0	31	86	3	86	53	10	8	28	1.63
190054--190125	17	4.2	17	80	1	63	40	12	6	40	1.70
190077--190126	17	2.9	17	87	0	73	44	12	2	42	1.53
190519--190570	25	2.1	25	96	0	95	34	21	19	25	1.96
199376--199447	17	4.2	17	83	5	83	38	13	6	40	1.72
199376--199447	34	2.1	35	89	2	110	38	13	6	40	1.72
199845--199898	25	2.2	24	90	3	81	35	22	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204287--204390	33	3.1	33	82	9	95	30	36	1	30	1.69
204758--204906	36	4.1	36	85	0	190	30	4	37	28	1.75
205253--205303	19	2.6	20	87	3	68	45	5	15	33	1.71
208450--208494	22	2.2	20	84	8	54	0	13	6	80	0.91
208859--209007	36	4.1	36	84	0	190	30	4	36	28	1.77
209354--209404	19	2.6	20	87	3	68	45	5	15	33	1.71
213317--213421	33	3.1	33	82	9	97	30	36	1	31	1.69
217473--217541	33	2.1	33	83	5	86	31	1	36	30	1.67
226991--227094	33	3.1	33	82	9	95	30	36	1	30	1.69
227462--227610	36	4.1	36	86	0	199	30	4	37	27	1.77
227960--228006	19	2.5	19	86	6	60	44	6	14	34	1.71
231135--231179	22	2.2	20	84	8	54	0	13	6	80	0.91
231544--231692	36	4.1	36	84	0	190	30	4	36	28	1.77
232039--232089	19	2.6	20	87	3	68	45	5	15	33	1.71
241444--241468	2	12.5	2	100	0	50	52	0	0	48	1.00
246395--246466	17	4.2	17	78	5	65	38	12	8	40	1.73
246869--246920	25	2.1	25	92	0	86	34	21	17	26	1.95
250870--250894	10	2.5	10	100	0	50	32	20	12	36	1.89
253025--253072	21	2.3	21	96	0	87	56	20	12	10	1.65

Tables:   1

The End!