genome.fa.s5032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005032.1 Hibiscus syriacus cultivar Beakdansim tig00011291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65707

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200--543	118	2.9	117	76	12	346	22	14	25	37	1.92
498--651	58	2.7	58	78	7	161	28	11	21	38	1.88
6782--6812	14	2.2	14	94	0	53	64	3	0	32	1.09
13113--13262	42	3.5	42	80	5	158	38	20	14	26	1.91
21217--21997	199	3.8	199	71	12	528	37	14	14	33	1.86
21542--21602	21	2.9	20	92	4	95	27	9	18	44	1.81
21348--21966	220	2.9	220	80	9	585	37	14	14	33	1.88
21568--21997	197	2.2	198	85	2	605	38	14	14	32	1.86
22871--22918	2	24.0	2	100	0	96	50	0	0	50	1.00
24736--24782	15	3.0	15	78	12	51	59	0	27	12	1.34
29954--30033	3	26.7	3	100	0	160	32	0	0	67	0.91
34954--34991	16	2.3	17	86	4	51	28	0	28	42	1.56
35143--35471	138	2.4	137	84	4	403	24	16	24	34	1.95
35438--35516	33	2.4	33	97	0	149	26	8	36	27	1.86
36257--36322	35	1.9	34	87	3	96	39	3	12	45	1.57
36828--36917	42	2.2	42	86	6	121	21	21	32	25	1.98
37473--37508	17	2.1	17	90	10	56	52	5	0	41	1.24
38668--38717	23	2.2	23	89	7	75	56	0	0	44	0.99
39777--39820	6	7.3	6	100	0	88	0	68	0	31	0.90
40956--41075	50	2.4	50	80	5	143	21	24	29	25	1.99
41273--41297	13	1.9	13	100	0	50	28	0	0	72	0.86
43200--43321	40	3.0	40	92	0	208	24	16	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44412--44451	18	2.2	18	100	0	80	25	22	20	32	1.98
46824--46872	15	3.3	15	79	0	53	24	2	12	61	1.42
46824--46886	30	2.1	30	85	5	83	23	6	11	58	1.55
47248--47347	41	2.4	41	73	5	103	26	0	21	53	1.46
47303--47347	14	3.2	14	83	0	54	24	0	22	53	1.46
47282--47347	28	2.4	28	82	7	73	24	0	21	54	1.45
47645--47800	65	2.4	64	84	5	181	32	23	16	26	1.96
56298--56453	65	2.4	64	81	5	172	30	23	17	28	1.97
57277--57343	28	2.4	28	82	0	80	26	1	13	58	1.44
57306--57394	28	3.2	28	75	9	83	29	1	14	55	1.47
57357--57395	14	2.8	14	84	0	51	30	0	15	53	1.42
63289--63374	19	4.5	19	97	0	154	6	27	19	45	1.76
63885--63925	17	2.6	16	81	11	57	12	53	9	24	1.68
65321--65360	20	2.0	21	85	14	57	30	10	7	52	1.62

Tables:   1

The End!