genome.fa.s5033.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005033.1 Hibiscus syriacus cultivar Beakdansim tig00011301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74456

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2598--2702	36	2.9	36	91	1	167	30	3	35	30	1.75
6593--6672	35	2.2	37	86	4	110	31	36	5	27	1.78
12768--12799	12	2.6	13	85	14	50	9	12	6	71	1.29
15661--16109	46	9.8	46	88	0	583	40	15	20	22	1.90
18838--18862	9	2.8	9	100	0	50	80	0	12	8	0.92
24026--24068	2	21.5	2	100	0	86	51	48	0	0	1.00
25304--25341	13	3.0	13	84	3	51	36	36	2	23	1.69
25372--25449	23	3.2	23	72	20	70	20	14	0	65	1.27
25384--25426	21	2.0	22	86	9	61	20	11	0	67	1.22
25395--25426	12	2.8	11	90	9	55	21	9	0	68	1.17
29206--29596	195	2.0	195	94	0	692	27	24	15	32	1.96
30222--30285	23	2.7	24	83	11	78	23	14	0	62	1.31
33567--33615	20	2.5	20	86	0	62	32	16	22	28	1.95
34023--34318	46	6.4	46	85	0	378	42	13	20	23	1.87
34023--34326	138	2.2	138	87	1	421	42	13	20	23	1.88
41351--41397	21	2.2	21	85	7	60	51	12	10	25	1.72
43664--43711	21	2.3	21	75	10	55	43	8	10	37	1.69
46738--46785	21	2.4	20	82	6	53	64	2	12	20	1.37
55529--55572	20	2.3	18	84	11	52	27	4	4	63	1.33
59556--59932	45	8.6	45	76	8	303	30	21	11	36	1.88
59604--59840	125	1.9	126	85	2	334	31	21	11	35	1.89
60423--60476	22	2.6	21	85	5	65	27	18	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60542--60594	20	2.6	20	85	11	72	33	18	13	33	1.90
66280--66582	45	6.7	45	82	4	317	29	20	9	39	1.84

Tables:   1

The End!