genome.fa.s5034.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005034.1 Hibiscus syriacus cultivar Beakdansim tig00011302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177960

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239--284	21	2.1	21	84	11	58	73	4	19	2	1.10
249--289	14	3.2	13	81	18	50	75	0	21	2	0.92
4370--4498	36	3.7	35	85	8	156	29	2	36	31	1.70
4400--4498	13	8.3	11	72	23	76	29	2	36	32	1.69
4386--4498	36	3.2	36	91	1	165	27	2	36	33	1.71
4733--4783	19	2.6	20	87	3	68	45	5	15	33	1.71
10453--10509	16	3.6	16	77	18	57	70	0	15	14	1.18
11312--11381	23	3.2	23	61	19	58	28	32	21	17	1.96
11296--11381	43	2.0	43	100	0	172	27	30	20	20	1.98
15888--15917	13	2.4	13	94	5	53	43	0	30	26	1.55
21616--21680	11	5.6	11	79	13	69	0	6	9	84	0.77
21616--21682	12	5.7	12	78	15	68	0	5	10	83	0.80
28970--29030	30	2.0	30	93	6	106	42	9	4	42	1.59
31454--31512	20	2.8	21	84	10	75	18	25	35	20	1.95
31430--31512	21	3.9	21	76	9	87	16	25	36	21	1.94
35279--35320	21	2.0	21	85	0	57	35	14	2	47	1.57
41646--41710	10	5.7	11	79	13	62	0	6	9	84	0.77
41667--41705	14	2.6	16	84	8	55	0	5	7	87	0.68
43225--43285	30	2.0	30	90	6	97	42	11	4	40	1.62
54185--54227	20	2.2	20	95	4	79	37	11	4	46	1.61
57047--57089	23	1.9	21	81	13	50	34	13	18	32	1.90
60350--60403	24	2.2	24	78	15	58	38	3	5	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62793--62872	35	2.2	37	91	4	128	27	3	37	31	1.74
67828--67883	13	4.7	11	74	21	51	0	19	1	78	0.84
67828--67883	18	3.1	18	82	17	71	0	19	1	78	0.84
72239--72287	16	2.9	17	79	14	57	69	0	16	14	1.19
72877--72953	35	2.1	35	85	4	100	29	5	35	29	1.79
76696--76731	15	2.4	15	90	0	54	50	5	0	44	1.25
79308--79350	19	2.4	17	77	14	50	9	13	13	62	1.53
80950--80985	15	2.4	15	90	0	54	50	5	0	44	1.25
84312--86043	867	2.0	865	98	0	3320	31	18	18	30	1.96
90986--91015	13	2.4	13	94	5	53	26	30	0	43	1.55
93760--93801	19	2.4	17	80	11	57	9	14	14	61	1.55
96385--96426	19	2.2	20	86	4	59	38	16	4	40	1.70
96385--96432	20	2.5	19	86	3	60	37	14	4	43	1.65
99169--99223	25	2.3	24	81	9	67	58	16	12	12	1.64
100334--100401	35	1.9	36	90	3	111	29	2	35	32	1.73
106825--106854	13	2.4	13	94	5	53	26	30	0	43	1.55
111574--111615	18	2.2	20	91	8	70	2	7	7	83	0.89
111576--111624	23	2.3	23	86	10	68	2	8	6	83	0.87
111812--111856	16	2.6	17	82	10	56	64	0	24	11	1.26
111996--112063	35	1.9	36	90	3	111	27	2	36	32	1.72
111991--112079	35	2.5	35	81	5	99	29	4	32	33	1.78
113019--113093	37	2.1	37	87	5	109	28	4	36	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116960--117039	35	2.2	37	91	4	128	27	3	37	31	1.74
118973--118999	8	3.4	8	100	0	54	51	0	11	37	1.37
123571--123613	23	1.9	21	81	13	50	34	13	18	32	1.90
139727--139809	36	2.3	36	95	0	148	31	36	3	28	1.75
139777--139826	22	2.2	23	89	3	75	36	36	4	24	1.74
141627--141702	30	2.5	30	93	0	125	28	15	32	22	1.95
142142--142191	20	2.5	20	90	3	75	38	10	6	46	1.62
142699--142740	16	2.6	16	78	14	50	14	28	0	57	1.38
145484--145534	20	2.6	20	90	3	77	31	15	7	45	1.75
147625--147653	13	2.3	13	94	5	51	51	10	27	10	1.68
149728--149791	8	8.0	8	81	6	76	82	9	6	1	0.89
149748--149788	14	2.8	14	88	7	55	80	7	9	2	0.99
149730--149792	32	1.9	33	90	3	101	82	7	7	1	0.90
149728--149802	16	4.4	17	77	19	61	80	10	8	1	0.98
149765--149802	20	1.9	20	88	0	58	78	10	10	0	0.95
159896--159939	6	7.2	6	87	12	63	79	0	20	0	0.73
159896--159939	17	2.4	17	88	11	61	79	0	20	0	0.73
159904--159939	11	3.1	11	92	8	54	80	0	19	0	0.71
164844--164886	20	2.2	20	95	4	79	37	11	4	46	1.61
169621--169725	33	3.1	34	80	12	92	33	1	34	30	1.69
169665--169777	36	3.2	36	91	1	165	28	3	36	31	1.74
175407--175475	33	2.1	33	83	5	86	31	1	36	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175461--175557	13	8.0	12	70	23	62	29	2	37	30	1.69
175459--175558	36	2.8	36	92	1	157	30	2	37	31	1.69

Tables:   1

The End!