Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005035.1 Hibiscus syriacus cultivar Beakdansim tig00011304_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63448

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
544--646
47
2.2
48
87
1
145
24
15
19
40
1.90
544--646
24
4.3
24
87
2
145
24
15
19
40
1.90
590--663
24
3.2
22
85
9
69
22
14
18
43
1.87
5976--6091
24
4.8
24
90
4
162
25
14
19
40
1.90
7401--7525
45
2.8
45
86
3
162
30
22
7
40
1.81
11486--11676
93
2.1
93
89
0
292
48
13
11
27
1.76
18911--18938
2
14.0
2
100
0
56
50
0
0
50
1.00
19174--19218
21
2.1
22
83
4
56
48
4
2
44
1.35
21319--21361
16
2.7
15
76
13
50
51
11
4
32
1.59
23143--23175
4
8.8
4
87
12
52
24
0
0
75
0.80
23142--23177
11
3.4
10
85
14
54
22
0
0
77
0.76
23143--23175
7
4.4
8
92
7
52
24
0
0
75
0.80
23172--23222
8
5.8
8
79
20
57
11
11
0
76
1.02
23172--23232
19
3.3
19
97
2
115
11
13
0
75
1.05
26449--26517
24
2.9
24
80
4
77
18
11
15
53
1.72
30963--31054
48
1.9
48
82
4
114
19
13
16
51
1.77
30959--31039
24
3.4
24
82
3
92
20
14
16
48
1.81
30987--31054
24
2.8
24
84
0
82
17
11
16
54
1.71
31215--31279
2
32.5
2
100
0
130
49
0
0
50
1.00
35301--35389
2
44.5
2
100
0
178
50
0
0
49
1.00
38904--38941
19
2.0
20
89
5
60
60
7
13
18
1.56
47890--47934
21
2.1
21
83
0
54
48
2
4
44
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48911--48936
2
13.0
2
100
0
52
50
0
0
50
1.00
55154--55195
21
2.0
21
81
9
50
54
4
2
38
1.34
58962--59059
42
2.4
41
78
13
103
27
18
21
32
1.96
59311--59403
39
2.5
37
89
5
134
22
24
11
40
1.88
60547--60592
14
3.3
14
87
0
65
6
10
0
82
0.83
60553--60596
14
3.1
14
90
0
70
4
13
0
81
0.83

Tables:   1

The End!