Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005036.1 Hibiscus syriacus cultivar Beakdansim tig00011305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80907

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3928--4061
28
4.9
28
69
14
118
28
19
11
41
1.86
3928--4087
80
2.0
79
91
1
257
28
21
11
38
1.88
5787--5823
19
1.9
19
94
0
65
37
13
5
43
1.67
6378--6421
11
4.2
10
82
8
52
70
4
11
13
1.31
6378--6418
21
1.9
21
90
5
64
68
4
12
14
1.36
9968--10027
10
5.7
10
82
9
75
0
6
8
85
0.76
10344--10388
11
4.1
11
82
5
56
71
4
11
13
1.29
10344--10385
22
1.9
22
90
9
68
69
4
11
14
1.34
10870--10912
22
1.9
23
85
4
61
53
13
4
27
1.60
13718--13786
33
2.1
33
83
5
86
31
1
36
30
1.67
13772--13868
13
8.0
12
72
22
62
28
3
37
30
1.73
13757--13869
36
3.2
36
92
1
174
27
3
36
32
1.74
18289--18385
13
8.0
12
72
22
62
28
3
37
30
1.73
18274--18386
36
3.2
36
92
1
174
27
3
36
32
1.74
21891--21939
1
49.0
1
91
0
80
0
0
4
95
0.25
21884--21931
22
2.2
22
88
0
69
0
2
8
89
0.56
22255--22299
11
4.1
11
82
5
56
71
4
11
13
1.29
22255--22296
22
1.9
22
90
9
68
69
4
11
14
1.34
26468--26503
18
2.0
18
88
0
54
2
0
13
83
0.76
26476--26542
18
3.7
19
76
19
65
0
8
8
82
0.86
26476--26503
9
3.1
9
100
0
56
0
0
10
89
0.49
26861--26905
11
4.1
11
85
5
56
71
2
11
15
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28219--28260
17
2.4
18
84
4
59
76
0
19
4
0.96
28449--28503
17
3.4
17
80
7
51
16
16
1
65
1.36
30549--30586
19
2.0
19
89
0
58
28
18
10
42
1.83
34361--34412
21
2.6
21
87
6
72
30
15
7
46
1.74
39831--39899
13
5.5
13
72
10
54
27
42
2
27
1.70
43037--43105
13
5.5
13
72
10
54
27
40
2
28
1.71
46351--46416
15
4.4
15
70
24
50
18
25
0
56
1.42
49963--50007
19
2.3
20
88
3
65
37
13
6
42
1.70
49971--50013
20
2.2
19
95
4
77
34
11
4
48
1.60
50354--50419
36
1.9
34
87
9
98
27
42
3
27
1.70
50828--50874
23
2.1
22
84
11
60
82
4
8
4
0.91
50910--50943
6
5.5
6
89
6
50
82
2
11
2
0.89
50910--50943
13
2.8
12
86
8
50
82
2
11
2
0.89
51934--51986
21
2.5
22
93
3
90
41
7
20
30
1.80
52796--52846
19
2.6
20
90
3
77
43
5
15
35
1.71
56971--57021
19
2.6
20
90
3
77
43
5
15
35
1.71
59336--59411
37
2.1
37
100
0
152
25
22
13
39
1.90
59912--59943
15
2.1
16
94
5
57
40
15
18
25
1.90
61145--61193
25
2.0
25
84
11
66
61
0
24
14
1.33
68897--68939
20
2.2
20
91
4
70
39
11
4
44
1.62
69279--69347
13
5.5
13
72
10
54
27
42
2
27
1.70
70232--70281
19
2.6
19
93
0
82
44
6
16
34
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74361--74411
19
2.6
20
90
3
77
43
5
15
35
1.71
78465--78514
19
2.6
20
84
9
68
44
6
16
34
1.72

Tables:   1

The End!