Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000504.1 Hibiscus syriacus cultivar Beakdansim tig00000961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64661

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
359--421
8
7.6
8
75
19
58
33
0
0
66
0.92
378--411
11
3.1
11
82
0
50
32
0
0
67
0.91
359--415
22
2.7
22
87
12
77
35
0
0
64
0.93
1041--1083
14
3.1
14
80
16
54
23
2
0
74
0.93
1041--1084
16
2.8
16
80
10
54
22
2
0
75
0.92
1110--1179
12
6.5
10
84
11
61
17
5
1
75
1.06
1106--1139
14
2.5
14
90
4
52
17
0
2
79
0.86
1123--1166
6
7.7
6
94
2
65
18
9
0
72
1.10
1041--1179
18
8.3
16
70
19
72
20
4
3
71
1.18
1041--1195
12
13.4
11
71
14
50
20
3
4
70
1.20
1284--1314
13
2.4
13
94
0
53
32
0
0
67
0.91
18064--18412
43
8.1
43
80
2
335
36
17
20
26
1.94
18064--18412
85
4.1
87
81
5
379
36
17
20
26
1.94
25059--25153
44
2.2
44
85
7
124
26
26
23
24
2.00
25078--25157
21
3.7
21
81
8
106
23
26
26
23
2.00
25077--25176
44
2.3
42
81
8
121
26
26
26
22
2.00
26687--26729
21
2.0
21
81
0
50
9
39
16
34
1.80
27014--27042
14
2.0
15
93
6
51
6
3
27
62
1.37
27756--27880
64
1.9
65
90
4
200
31
22
19
27
1.98
30448--30485
16
2.3
17
81
4
51
23
5
23
47
1.72
31053--31139
23
3.7
23
72
11
77
20
24
26
28
1.99
31983--32031
7
7.0
7
88
0
71
26
24
2
46
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39116--39333
103
2.1
103
93
0
373
26
12
23
37
1.90
39340--39417
23
3.3
23
85
1
102
24
19
23
33
1.97
48260--48307
22
2.2
22
100
0
96
22
8
22
45
1.79
48266--48319
22
2.5
22
90
0
81
27
9
20
42
1.82
56537--56578
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!