genome.fa.s5041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005041.1 Hibiscus syriacus cultivar Beakdansim tig00011314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53687

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269--299	16	2.0	16	93	6	55	45	16	25	12	1.83
2406--2450	22	2.2	21	84	11	58	40	8	15	35	1.79
6122--6320	106	1.9	105	83	7	260	38	24	8	29	1.84
7880--7917	2	19.0	2	100	0	76	50	0	0	50	1.00
10162--10202	17	2.4	17	100	0	82	51	0	0	48	1.00
12059--12120	18	3.5	18	65	12	56	33	0	4	61	1.17
12123--12165	15	2.8	16	89	6	63	44	0	0	55	0.99
12366--12391	13	2.0	13	100	0	52	53	0	0	46	1.00
13673--13699	11	2.5	11	100	0	54	37	11	22	29	1.89
18395--18429	17	2.1	16	89	10	52	37	8	22	31	1.85
19226--19723	73	6.8	73	90	1	741	34	14	12	38	1.84
19226--19723	147	3.4	147	90	2	756	34	14	12	38	1.84
19734--19764	16	1.9	16	93	0	53	22	25	12	38	1.90
23860--23924	31	2.1	31	100	0	130	43	10	3	43	1.55
28004--28055	24	2.2	24	82	0	59	50	17	11	21	1.77
28024--28141	24	4.9	24	88	6	159	40	19	17	22	1.91
28027--28158	48	2.7	47	80	11	151	42	18	16	21	1.89
30564--30610	15	3.3	15	85	5	62	23	25	36	14	1.93
30587--30646	13	4.2	13	76	19	66	15	21	46	16	1.83
30587--30650	31	2.1	31	96	0	119	14	20	48	17	1.81
30564--30610	8	6.5	8	75	20	50	23	25	36	14	1.93
30592--30632	18	2.3	18	100	0	82	9	21	51	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34218--34269	20	2.6	20	84	0	68	42	19	21	17	1.89
34081--34446	202	1.8	202	92	0	624	42	14	16	27	1.86
36887--36930	21	2.1	21	95	0	79	40	11	34	13	1.81
37195--37233	18	2.2	18	95	0	69	56	0	41	2	1.13
37877--37924	20	2.4	20	100	0	96	35	27	25	12	1.92
39150--39187	15	2.5	15	91	0	58	42	26	7	23	1.81
39204--40362	200	5.7	199	80	6	1214	36	13	16	32	1.88
39601--39653	21	2.5	21	100	0	106	33	9	16	39	1.81
39401--39853	221	2.0	221	85	1	613	35	13	17	33	1.89
39204--40362	421	2.8	401	83	4	1378	36	13	16	32	1.88
41873--41912	6	6.7	6	91	0	53	42	2	32	22	1.67
43205--43259	24	2.3	25	78	9	60	30	5	16	47	1.69
43216--43268	24	2.2	24	82	0	61	33	3	15	47	1.63
44615--45184	179	3.1	180	77	10	456	37	14	16	31	1.88
44795--45539	200	3.7	197	85	3	882	38	13	15	32	1.87
47118--47166	19	2.6	19	83	0	71	34	4	8	53	1.50
49646--50341	200	3.5	197	81	7	763	39	14	15	30	1.87
50359--50517	83	1.9	85	89	5	250	33	15	10	40	1.81

Tables:   1

The End!