genome.fa.s5042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005042.1 Hibiscus syriacus cultivar Beakdansim tig00011317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101477

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1129--1215	40	2.1	42	91	8	144	45	9	2	42	1.48
3657--3697	18	2.3	18	87	8	57	68	7	2	21	1.26
5829--5903	33	2.3	32	83	2	87	78	2	2	16	0.97
6544--6601	3	18.3	3	83	13	64	70	0	0	29	0.87
10436--10741	87	3.5	84	75	12	271	52	5	16	24	1.66
10436--10741	43	7.1	42	78	9	287	52	5	16	24	1.66
16168--16222	27	2.0	28	96	3	103	36	10	10	41	1.75
18355--18398	21	2.1	21	91	4	72	13	34	2	50	1.55
25402--25434	17	1.9	17	93	0	57	39	0	0	60	0.97
41936--42033	3	32.7	3	87	4	144	62	1	0	36	1.02
42159--42522	76	4.8	76	95	0	638	35	20	20	22	1.96
42456--42567	45	2.4	45	94	2	188	33	21	23	21	1.97
42378--42643	121	2.2	121	95	1	469	34	21	21	21	1.96
42302--42719	197	2.1	197	96	0	764	35	21	21	21	1.96
42226--42773	273	2.0	275	96	1	1001	35	21	21	21	1.96
42501--42773	76	3.6	76	97	1	505	34	22	21	21	1.97
43819--43930	54	2.1	54	86	3	154	22	23	16	38	1.93
46028--46253	114	2.0	114	89	0	344	30	21	15	31	1.94
48302--48336	11	3.1	11	84	8	52	0	17	0	82	0.66
48634--48687	2	27.0	2	100	0	108	50	0	0	50	1.00
53192--53227	2	18.0	2	100	0	72	50	0	0	50	1.00
54011--54048	14	2.7	15	84	8	53	0	10	5	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54478--54595	3	38.7	3	88	3	173	62	0	0	36	1.01
57672--57725	28	2.0	27	92	3	90	38	3	7	50	1.48
57833--57877	22	2.0	23	86	8	65	13	8	13	64	1.49
62344--62425	37	2.3	37	87	6	116	43	19	4	31	1.72
71258--71322	21	3.2	20	71	6	58	23	18	20	38	1.93
71283--71380	44	2.3	44	89	6	150	24	19	21	34	1.96
71282--71381	19	4.8	20	67	16	60	26	19	21	34	1.96
71470--71494	6	4.2	6	100	0	50	36	48	16	0	1.46
72244--72370	19	6.3	19	75	13	119	33	21	20	24	1.97
72244--72370	61	2.1	61	93	0	218	33	21	20	24	1.97
72293--72371	42	1.9	40	94	5	140	35	20	21	22	1.96
72379--72426	21	2.3	21	100	0	96	14	18	33	33	1.91
74645--74691	24	2.0	24	86	0	67	48	0	0	51	1.00
77020--77177	30	5.4	30	81	6	144	58	12	13	16	1.64
77000--77179	60	3.1	58	80	5	177	57	11	13	16	1.65
77844--77897	21	2.5	21	90	3	81	31	27	24	16	1.96
78635--78684	17	2.9	17	93	3	82	18	20	28	34	1.95
78735--78796	3	21.7	3	80	12	69	67	0	0	32	0.91
78735--78782	21	2.3	21	92	0	78	66	0	0	33	0.92
80277--80313	13	2.8	13	95	0	65	43	27	8	21	1.80
80516--80565	15	3.4	14	80	5	55	56	0	8	36	1.29
91567--91605	18	2.2	18	86	9	53	23	15	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94246--94308	23	2.8	23	92	2	101	19	20	26	33	1.96
98087--98136	19	2.6	19	96	0	91	32	18	28	22	1.97
98087--98182	19	4.6	22	80	11	82	32	18	25	23	1.97
100677--100724	12	3.8	12	77	5	51	18	20	25	35	1.95
100700--100729	14	2.1	14	93	0	51	23	20	20	36	1.95

Tables:   1

The End!