genome.fa.s5043.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005043.1 Hibiscus syriacus cultivar Beakdansim tig00011321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112405

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2371--2404	13	2.8	12	86	8	50	26	23	0	50	1.50
28244--28269	2	13.0	2	100	0	52	50	0	0	50	1.00
28515--28549	13	2.6	14	86	13	56	37	14	5	42	1.69
33950--34040	29	3.0	29	78	7	101	34	19	6	39	1.78
37622--37758	70	2.0	70	89	2	213	35	23	13	27	1.93
39099--39148	20	2.5	20	83	6	57	38	28	0	34	1.57
40310--40381	30	2.4	31	75	13	78	30	12	9	47	1.74
41805--41860	16	3.4	16	71	11	51	33	14	14	37	1.86
42453--42485	12	2.6	13	85	9	50	18	18	0	63	1.31
43411--43444	16	2.1	16	89	10	52	70	0	0	29	0.87
45973--46260	143	2.0	144	86	0	398	27	22	19	30	1.98
47140--47206	29	2.3	29	100	0	116	44	0	14	40	1.46
47457--47501	22	2.1	21	84	12	56	28	8	0	62	1.25
47587--47631	17	2.6	17	85	3	54	31	2	0	66	1.04
49660--49893	64	3.7	64	89	2	337	21	17	23	36	1.94
51931--51963	15	2.2	15	100	0	66	45	0	24	30	1.53
63427--63477	20	2.6	20	93	3	86	33	11	7	47	1.69
70269--70318	12	3.9	14	78	19	56	68	6	8	18	1.36
70271--70323	25	2.2	24	86	10	72	71	5	9	13	1.29
70938--71214	142	2.0	142	99	0	545	27	11	26	34	1.91
71408--71460	20	2.6	21	85	11	74	39	20	11	28	1.87
72685--72735	20	2.6	20	90	3	86	19	35	29	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84141--84447	172	1.8	173	82	6	412	29	10	10	49	1.70
84739--84795	17	3.4	17	77	0	69	57	1	3	36	1.26
84718--84797	34	2.2	36	86	6	110	61	2	5	31	1.31
87845--88056	20	9.4	20	71	22	91	22	23	12	42	1.87
87808--88108	46	6.5	46	91	1	462	23	21	10	43	1.84
87886--88101	20	9.6	20	68	21	117	21	23	11	43	1.85
88483--88529	22	2.2	22	85	7	62	31	19	14	34	1.92
88590--88644	19	2.7	20	78	18	60	29	20	16	34	1.94
93486--93706	44	5.3	45	75	15	163	49	4	19	25	1.68
93450--93706	128	2.0	125	81	8	297	50	5	19	24	1.67
93486--93746	42	6.2	42	75	14	193	49	5	20	24	1.70
95123--95168	21	2.3	20	89	10	76	23	32	8	34	1.86
96532--96561	2	15.5	2	93	6	53	50	0	0	50	1.00
96705--96742	2	19.0	2	100	0	76	50	0	0	50	1.00
99052--99088	2	18.5	2	100	0	74	48	0	0	51	1.00
99601--99651	18	2.8	18	84	3	57	1	25	23	49	1.61
101214--101273	21	2.8	21	80	7	68	20	23	31	25	1.98
107418--107458	3	13.7	3	90	10	66	68	0	0	31	0.90
108361--108463	42	2.4	42	83	8	127	31	21	24	23	1.99
109330--109415	44	2.0	44	97	0	163	20	32	12	33	1.91
110605--110894	55	5.4	54	79	10	276	35	18	18	27	1.94
111161--111518	45	8.1	45	87	2	519	46	5	22	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111303--111514	21	9.8	20	64	18	68	45	5	22	26	1.73

Tables:   1

The End!