Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005044.1 Hibiscus syriacus cultivar Beakdansim tig00011322_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46059

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
379--488
21
5.4
21
70
13
70
20
20
36
22
1.95
1065--1102
20
1.9
20
88
0
58
15
21
15
47
1.82
1069--1144
33
2.3
33
84
6
91
15
18
18
47
1.83
1114--1305
99
1.9
102
93
3
336
18
17
21
42
1.89
1236--1291
19
2.8
20
86
10
80
19
17
23
39
1.92
1137--1303
20
8.4
20
70
11
101
18
17
22
40
1.91
3161--3210
20
2.5
20
93
0
82
50
24
14
12
1.76
3606--3656
22
2.3
22
93
0
93
19
11
47
21
1.81
3802--3956
20
7.7
20
76
9
136
27
18
23
30
1.98
3824--3956
40
3.3
39
84
4
158
27
19
24
29
1.98
3802--3917
61
1.9
61
94
0
205
26
18
24
31
1.97
3971--4016
19
2.4
19
85
3
56
21
17
30
30
1.96
3982--4018
19
1.9
19
94
0
65
21
16
29
32
1.95
5715--5859
6
24.2
6
83
5
87
2
22
29
46
1.63
5690--5859
18
9.6
18
73
7
114
2
21
30
45
1.65
9311--9357
21
2.3
21
88
3
69
46
6
6
40
1.55
9391--9445
17
3.1
17
70
10
56
45
7
7
40
1.60
9480--9546
22
3.1
22
75
14
52
49
5
2
41
1.42
11190--11845
113
5.8
113
92
2
1011
31
16
22
29
1.96
11190--11848
225
2.9
223
90
3
1029
31
16
22
29
1.96
18258--18291
8
4.2
8
92
0
59
38
2
0
58
1.13
27391--27439
21
2.3
22
82
10
66
46
6
6
40
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27560--27626
22
3.1
22
75
14
52
49
5
2
41
1.42
29464--29498
15
2.2
16
90
5
54
14
0
22
62
1.31
29649--29714
33
2.0
33
96
0
123
28
13
15
42
1.85
30059--30100
21
2.0
21
85
0
57
28
7
40
23
1.81
31475--31519
20
2.2
20
88
0
63
28
17
17
35
1.93
31507--31578
20
3.6
20
96
0
126
26
18
20
34
1.95
31490--31578
40
2.2
40
84
4
108
26
19
20
33
1.96
37487--37541
2
27.5
2
100
0
110
49
0
0
50
1.00
39025--39102
38
2.1
38
90
0
120
28
5
8
57
1.50
39074--39194
16
7.6
16
75
5
102
31
7
5
55
1.51
39074--39186
32
3.6
32
78
6
122
31
7
6
53
1.55
39033--39194
8
20.6
8
65
8
55
30
6
6
56
1.52
39407--39493
40
2.2
40
91
0
138
45
24
6
22
1.76
40092--40134
19
2.3
19
83
0
50
39
27
6
25
1.81
43043--43087
23
1.9
24
81
4
56
22
8
8
60
1.55
43806--43875
32
2.2
32
92
0
122
35
11
17
35
1.85
45147--45181
18
1.9
18
88
0
52
28
37
11
22
1.89
45224--45285
11
5.5
11
75
11
54
41
3
9
45
1.53

Tables:   1

The End!