genome.fa.s5045.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005045.1 Hibiscus syriacus cultivar Beakdansim tig00011327_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53558

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--263	27	2.8	29	83	9	112	34	14	8	41	1.77
1549--1603	20	3.0	18	80	12	67	32	1	1	63	1.15
1545--1603	3	20.0	3	77	16	61	32	1	1	64	1.13
3042--3105	22	2.9	23	79	9	69	29	1	3	65	1.17
3098--3138	3	13.7	3	100	0	82	34	0	0	65	0.93
3246--3489	134	1.8	136	90	7	399	36	7	8	47	1.63
5403--5489	43	2.0	44	84	2	113	31	10	22	35	1.88
6879--6916	18	2.1	18	90	0	58	21	13	26	39	1.89
8114--8248	71	1.9	72	93	4	238	28	20	17	34	1.94
11330--11503	75	2.4	70	81	6	206	33	16	21	27	1.95
12370--12587	54	4.0	54	83	2	251	40	14	19	26	1.89
12370--12619	54	4.6	54	79	4	209	41	14	19	24	1.89
12377--12619	108	2.2	107	78	11	262	41	13	20	24	1.89
13004--13082	22	3.6	22	89	0	122	36	16	11	35	1.85
13468--13910	113	3.9	112	83	9	540	38	15	19	27	1.91
13816--14156	137	2.5	133	87	6	476	38	14	20	26	1.91
14442--14534	26	3.7	26	81	9	120	30	1	2	66	1.10
14441--14534	3	32.0	3	80	12	106	29	1	2	67	1.10
15646--15738	30	3.2	28	72	10	96	24	9	6	59	1.53
16997--17043	21	2.2	22	84	3	60	40	2	4	53	1.32
18722--18754	14	2.3	15	89	5	50	24	3	15	57	1.52
18969--19072	45	2.3	46	76	6	113	38	8	14	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19210--19322	58	1.9	59	85	7	156	34	7	14	43	1.74
19557--19637	39	2.1	39	97	0	153	41	4	16	37	1.69
19572--19705	39	3.4	39	82	6	130	41	6	15	36	1.74
19424--19665	127	1.9	128	81	4	292	38	8	11	40	1.73
19611--19718	39	2.8	39	79	10	114	38	6	14	39	1.72
19747--19837	39	2.3	39	90	0	137	47	6	10	35	1.65
19549--19984	183	2.5	173	80	7	428	39	7	13	39	1.74
19792--19885	49	1.9	48	84	2	125	43	8	12	35	1.73
19840--20076	93	2.5	94	87	4	336	36	7	14	41	1.74
24518--25514	497	2.0	497	99	0	1985	43	9	9	38	1.69
25870--25962	40	2.3	41	88	3	134	49	13	11	24	1.76
25870--25976	40	2.6	39	77	12	117	47	14	11	27	1.77
29196--29924	216	3.4	212	88	6	1095	50	8	11	29	1.68
30005--30086	2	40.5	2	70	16	53	48	3	3	43	1.38
30005--30160	20	8.2	19	70	19	85	46	5	5	41	1.51
30053--30099	18	2.5	20	93	6	80	46	8	4	40	1.54
30016--30086	31	2.3	30	83	9	81	47	4	4	43	1.42
30269--30307	14	2.8	14	84	0	51	20	0	33	46	1.51
30495--30551	27	2.2	26	93	3	96	38	7	3	50	1.46
30466--30623	60	2.7	58	81	11	187	40	6	3	49	1.46
30529--30607	25	2.9	27	81	12	90	41	7	0	50	1.31
30466--30697	33	7.5	33	73	15	142	40	7	4	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30607--30766	18	8.7	18	67	23	93	40	9	9	40	1.70
30653--30766	42	2.8	42	85	6	157	39	9	8	42	1.69
30856--31170	20	15.4	20	67	23	92	46	7	3	42	1.49
30857--31248	2	188.5	2	63	26	63	46	7	4	42	1.50
30863--31042	9	20.6	9	65	29	70	47	8	2	41	1.46
30850--31238	51	7.7	50	67	20	172	45	7	4	42	1.51
30863--30931	34	2.0	36	85	5	97	46	7	2	43	1.46
30961--31248	7	46.7	6	63	25	54	46	6	4	43	1.49
30892--31028	74	1.9	71	83	8	177	47	8	2	40	1.49
31002--31247	18	14.2	18	71	14	187	46	6	4	42	1.50
31006--31248	69	3.6	68	78	11	196	46	6	4	42	1.50
31059--31203	71	2.1	69	92	2	236	46	6	4	42	1.52
31163--31220	17	3.5	17	69	21	59	41	5	6	46	1.53
31007--31249	104	2.4	102	84	6	312	46	6	4	42	1.50
31007--31280	51	5.3	51	80	11	326	45	6	5	41	1.53
31688--32030	101	3.4	101	88	3	458	31	31	5	31	1.80
32202--32277	6	12.7	6	80	0	89	44	46	3	5	1.44
32592--32622	2	15.5	2	100	0	62	51	0	0	48	1.00
44164--44370	65	3.2	65	84	3	276	24	19	14	42	1.88
44435--44553	48	2.5	48	92	0	193	26	26	16	30	1.97
44929--44964	3	11.7	3	88	5	54	66	0	0	33	0.92
44937--44961	13	1.9	13	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44930--44969	19	2.1	19	90	0	62	62	0	0	37	0.95
50065--50098	16	2.1	16	88	0	50	29	11	26	32	1.92

Tables:   1

The End!