genome.fa.s5046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005046.1 Hibiscus syriacus cultivar Beakdansim tig00011331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123525

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2920--2985	33	2.0	33	96	0	123	24	10	9	56	1.62
5539--5572	13	2.8	12	86	8	50	82	2	2	11	0.89
5539--5574	6	5.8	6	87	6	54	80	2	2	13	0.93
16489--16530	20	2.0	21	86	4	59	35	26	16	21	1.94
25662--25773	24	4.7	24	91	4	172	38	21	17	22	1.93
25662--25768	12	8.8	13	68	15	68	39	22	16	21	1.92
34856--35006	59	2.5	60	82	5	180	32	17	5	45	1.71
35415--35560	73	2.0	73	98	0	283	46	11	10	30	1.75
36730--36806	37	2.1	37	95	2	138	31	10	14	44	1.79
37230--37259	15	2.0	15	100	0	60	13	26	46	13	1.80
41735--41811	37	2.1	37	95	2	138	31	10	14	44	1.79
42715--42872	39	4.0	38	77	13	149	31	13	15	39	1.85
42713--42910	81	2.4	82	84	3	240	31	13	14	40	1.84
43570--44321	293	2.6	293	82	2	882	33	16	14	35	1.90
76288--76331	21	2.1	21	82	0	52	34	13	13	38	1.84
76856--76960	53	2.0	53	90	9	171	59	0	7	33	1.26
77891--78048	21	7.8	20	72	7	86	38	25	17	18	1.92
78015--78264	20	12.5	20	81	5	229	37	24	18	20	1.94
78947--78993	24	2.0	24	87	8	69	25	14	21	38	1.92
79168--79192	12	2.1	12	100	0	50	72	0	28	0	0.86
81494--81704	33	6.2	34	81	13	224	46	18	21	13	1.83
81508--81710	19	11.7	19	74	20	203	45	18	21	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81536--81710	52	3.3	52	97	0	323	45	17	22	14	1.84
81700--81816	52	2.2	53	96	1	218	14	22	17	45	1.85
81719--81816	19	5.4	19	84	13	143	14	21	17	46	1.83
81923--81959	14	2.6	14	91	0	65	45	21	0	32	1.52
83878--84012	19	7.6	19	75	16	110	45	25	18	9	1.80
83934--83990	14	3.7	14	72	20	51	45	28	19	7	1.76
83915--84007	33	2.8	33	91	0	159	47	24	19	8	1.77
83878--84012	52	2.5	54	77	18	149	45	25	18	9	1.80
84008--84136	19	7.3	19	73	17	116	8	17	27	46	1.77
84008--84099	33	2.8	33	90	3	141	7	18	27	46	1.76
84184--84652	93	5.1	93	99	0	922	46	19	12	21	1.83
86345--86459	33	3.5	33	92	0	203	46	20	22	10	1.81
86345--86459	14	6.9	18	67	25	74	46	20	22	10	1.81
86367--86464	19	5.7	19	69	22	72	43	22	22	11	1.84
86476--86532	14	3.7	14	75	20	60	8	24	22	43	1.81
86460--86540	33	2.5	33	95	0	144	8	22	22	46	1.78
86517--86592	21	3.7	21	80	3	100	13	25	15	46	1.82
86516--86593	41	1.9	41	94	0	138	14	25	15	44	1.84
86483--86592	21	5.8	20	71	17	99	12	24	17	45	1.83
86891--86945	22	2.5	22	75	0	65	21	16	38	23	1.93
87091--87284	20	9.6	20	81	5	212	18	20	25	35	1.95
87091--87284	60	3.2	60	82	0	244	18	20	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87271--87353	21	4.0	21	73	6	78	25	16	24	33	1.96
87251--87349	42	2.4	43	77	11	100	21	18	23	37	1.94
88016--88320	169	1.8	169	82	5	393	32	6	8	52	1.59
88294--88351	26	2.2	26	82	11	66	48	3	0	48	1.18
89323--89857	110	4.9	110	87	1	759	31	18	17	32	1.94
89323--89857	218	2.4	218	87	2	739	31	18	17	32	1.94
93908--93954	2	23.5	2	91	0	76	44	0	0	55	0.99
95890--96317	110	3.9	110	84	3	556	32	17	16	33	1.92
102871--102925	27	2.1	26	89	3	83	32	12	9	45	1.74
107263--107687	110	3.9	109	84	4	523	32	17	16	33	1.93
111799--111846	12	3.9	12	78	13	53	39	20	18	20	1.92
114814--114839	7	3.7	7	100	0	52	42	42	15	0	1.47
116397--116434	3	12.7	3	100	0	76	31	0	0	68	0.90
121234--121307	24	3.0	25	96	4	141	43	28	4	24	1.72

Tables:   1

The End!