Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005048.1 Hibiscus syriacus cultivar Beakdansim tig00011337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58530

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8356--8407
24
2.2
24
82
0
59
48
21
11
19
1.80
8372--8436
24
2.7
25
90
4
98
35
20
20
24
1.96
11116--11158
22
2.0
22
95
0
77
34
23
18
23
1.96
11568--11602
17
2.1
17
94
0
61
42
14
8
34
1.76
13781--13860
22
3.6
22
76
5
90
23
23
26
26
2.00
13759--13879
43
2.8
42
75
11
120
23
23
27
26
2.00
13785--13879
21
4.4
21
75
9
77
24
21
26
28
1.99
19306--19375
26
2.7
26
100
0
140
28
22
24
24
1.99
19422--19460
20
2.0
20
89
0
60
20
15
33
30
1.94
22833--23242
141
2.9
141
84
2
484
34
18
21
25
1.96
23998--24069
36
2.0
36
94
0
126
23
26
13
36
1.93
28368--28611
120
2.0
120
100
0
488
31
19
22
25
1.98
29161--29216
24
2.3
24
96
0
103
30
16
16
37
1.90
30734--30781
22
2.2
22
85
7
62
29
16
12
41
1.85
32192--32247
26
2.2
25
78
9
60
58
0
7
33
1.25
33386--33585
101
2.0
101
100
0
400
48
15
16
20
1.81
37208--37238
13
2.4
13
88
0
53
25
12
16
45
1.83
40343--40615
141
1.9
141
81
2
325
33
21
22
22
1.97
46200--46247
22
2.2
22
85
7
62
29
16
12
41
1.85
47222--47247
10
2.6
10
100
0
52
73
7
0
19
1.07
48664--48704
18
2.3
18
91
8
66
12
63
14
9
1.52
49453--49496
16
2.8
16
100
0
88
47
13
18
20
1.82

Tables:   1

The End!