genome.fa.s5049.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005049.1 Hibiscus syriacus cultivar Beakdansim tig00011338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139103

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936--974	20	2.0	19	90	5	60	38	38	15	7	1.76
1610--1663	26	2.1	26	96	0	99	29	20	25	24	1.99
4153--4233	30	2.7	30	75	7	83	37	11	4	46	1.61
4153--4238	29	2.9	29	77	5	82	37	11	5	45	1.65
10504--10551	20	2.4	21	82	6	64	54	0	0	45	0.99
10504--10545	11	4.1	10	79	14	50	52	0	0	47	1.00
10505--10552	17	2.9	17	76	14	55	54	0	0	45	0.99
10506--10553	14	3.6	13	78	10	53	56	0	0	43	0.99
10715--10840	36	3.3	36	70	15	87	27	23	13	35	1.92
10959--11087	36	3.6	35	85	5	168	26	22	17	33	1.96
11362--11487	20	6.3	20	77	12	80	38	19	14	26	1.90
11362--11487	40	3.2	38	79	13	128	38	19	14	26	1.90
11379--11508	40	3.3	38	80	8	134	36	20	13	29	1.91
11420--11507	20	4.4	19	80	8	77	38	18	13	29	1.89
11379--11507	60	2.2	60	81	5	145	37	20	13	28	1.91
12950--13077	41	3.1	41	88	1	177	28	20	14	35	1.92
24869--24959	44	2.1	43	83	6	112	29	26	18	25	1.98
26962--27026	2	32.5	2	100	0	130	49	0	0	50	1.00
27310--27361	13	3.8	13	73	9	50	42	7	5	44	1.57
27305--27360	28	2.0	28	96	0	103	41	7	8	42	1.63
27795--27845	19	2.7	19	87	0	66	29	27	17	25	1.98
27730--27887	84	1.9	84	82	5	203	29	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27729--27910	84	2.2	85	80	6	201	28	23	19	28	1.98
28940--29000	16	3.7	16	81	12	70	59	0	0	40	0.98
31461--31501	2	20.5	2	94	0	73	53	0	0	46	1.00
32240--32394	83	1.9	83	86	5	224	24	12	23	39	1.90
32214--32411	83	2.4	83	80	4	213	26	14	21	37	1.92
35240--35271	12	2.7	12	95	0	55	43	18	3	34	1.66
36587--36646	29	2.0	30	90	6	95	35	6	15	43	1.72
36747--36789	22	1.9	23	90	4	70	32	27	18	20	1.96
40138--40204	29	2.3	29	100	0	134	47	7	10	34	1.66
40247--40345	21	4.7	21	76	14	105	24	35	18	22	1.96
40247--40345	42	2.4	41	85	10	121	24	35	18	22	1.96
40366--40483	21	5.7	21	81	8	127	19	26	24	29	1.98
40366--40483	62	1.9	62	94	0	209	19	26	24	29	1.98
40366--40495	41	3.2	41	88	2	181	18	26	24	30	1.98
40614--40653	21	1.9	22	90	10	66	35	37	12	15	1.85
45679--45836	86	1.8	86	91	0	262	38	14	13	33	1.85
45679--45804	42	2.9	44	68	21	120	41	13	11	33	1.81
51137--51172	16	2.2	16	100	0	72	36	36	5	22	1.78
55759--56190	54	8.0	54	80	6	455	27	17	20	34	1.95
76264--76311	25	1.9	25	83	8	62	52	4	2	41	1.32
77557--77609	3	17.0	3	80	7	52	58	1	1	37	1.20
77547--77582	15	2.3	16	95	4	65	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77557--77625	23	3.1	21	84	13	86	57	2	1	37	1.22
77790--78477	250	2.8	249	90	2	1051	36	17	15	30	1.91
84833--84857	11	2.3	11	100	0	50	60	8	0	32	1.26
86609--86687	3	25.0	3	82	7	86	59	1	2	36	1.19
86672--86718	22	2.2	21	84	3	58	63	8	0	27	1.23
87783--87829	24	2.0	24	83	8	60	57	12	2	27	1.47
91117--91160	20	2.2	20	84	4	63	65	0	15	18	1.27
98006--98052	24	2.0	24	83	8	60	57	12	2	27	1.47
104207--104615	196	2.1	195	83	4	520	38	5	9	46	1.61
104687--104749	29	2.1	30	82	8	76	60	4	0	34	1.18
114872--114935	3	21.3	3	100	0	128	67	0	0	32	0.91
115439--115694	139	1.8	138	84	2	352	40	15	13	30	1.86
116962--116988	8	3.4	8	100	0	54	11	37	0	51	1.37
125915--125972	2	29.0	2	100	0	116	50	0	0	50	1.00
127323--127391	34	1.9	35	85	8	95	46	10	5	37	1.62
127944--128003	29	2.3	26	79	20	79	48	6	6	38	1.56
128381--128411	15	2.0	16	93	6	55	38	12	12	35	1.82
135290--135349	31	2.0	30	86	3	84	45	15	20	20	1.86
135154--135584	186	2.3	187	84	4	566	41	14	14	29	1.86
135474--135540	31	2.2	32	79	10	79	47	16	19	16	1.82
136373--136572	56	3.6	55	89	4	276	28	17	14	40	1.89
136778--136839	2	32.0	2	93	6	110	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137007--137061	23	2.3	25	81	6	69	61	7	1	29	1.33

Tables:   1

The End!