genome.fa.s5051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005051.1 Hibiscus syriacus cultivar Beakdansim tig00011340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74553

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2555--2651	47	2.0	48	98	2	187	37	25	6	30	1.81
2750--2915	58	2.8	58	77	9	165	41	4	21	32	1.74
2745--2923	60	3.0	58	79	7	184	40	4	21	32	1.73
5665--5713	25	2.0	25	87	0	71	32	12	28	26	1.92
10833--10994	65	2.5	65	84	6	195	29	22	19	28	1.98
19243--19404	65	2.5	65	84	6	204	29	24	18	27	1.98
21110--21155	22	2.0	23	87	4	67	19	52	19	8	1.72
21109--21172	12	5.3	13	75	17	75	18	46	20	14	1.83
21166--21195	14	2.1	14	93	0	51	13	20	30	36	1.90
21195--21275	29	2.8	29	82	0	99	25	6	22	45	1.75
21969--22040	24	3.0	24	81	0	90	25	15	19	40	1.90
23842--24004	82	2.0	80	95	2	290	45	14	12	28	1.80
24165--24195	2	15.5	2	100	0	62	48	0	0	51	1.00
27553--27672	44	2.7	43	80	10	136	25	20	23	30	1.99
27994--28062	21	3.3	21	81	4	77	1	39	15	43	1.56
34088--34246	52	3.1	52	95	0	291	44	15	6	33	1.74
35316--35450	42	3.2	42	81	4	157	25	22	17	33	1.96
36415--36519	37	2.8	37	85	0	138	41	14	14	29	1.85
41440--41972	183	2.9	183	97	0	996	26	20	21	30	1.98
43117--43230	36	3.2	34	73	5	93	26	16	13	43	1.84
43101--43275	72	2.4	75	83	8	200	27	18	12	41	1.87
43346--43665	108	3.1	104	87	5	443	30	20	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43565--43640	36	2.1	36	87	0	107	22	19	15	42	1.89
43809--44470	105	6.3	105	88	2	902	34	25	17	22	1.96
45013--45117	37	2.8	37	85	0	138	41	14	14	29	1.85
45474--45516	18	2.5	17	85	7	61	25	4	2	67	1.22
47422--47456	18	1.9	18	88	0	52	31	5	20	42	1.75
47564--47612	23	2.1	23	96	0	89	12	36	22	28	1.90
48266--48326	32	2.0	32	87	6	90	40	3	0	55	1.16
48285--48339	23	2.4	23	84	6	67	41	1	0	56	1.10
48285--48336	20	2.4	22	81	12	63	42	1	0	55	1.10
65781--65892	26	4.3	26	81	0	143	40	11	19	28	1.87
65781--65896	52	2.2	52	89	0	169	39	12	18	28	1.88
66904--67594	166	4.1	165	74	5	455	30	19	13	36	1.91
66869--67481	332	1.8	332	81	4	745	32	18	14	34	1.91
69047--69093	21	2.3	21	81	3	51	53	6	29	10	1.60
70105--71063	166	5.7	167	76	7	749	34	14	20	30	1.93
70121--70966	335	2.5	333	79	8	855	33	15	20	30	1.94
71647--71687	15	2.7	15	78	14	57	24	7	12	56	1.61

Tables:   1

The End!