Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005052.1 Hibiscus syriacus cultivar Beakdansim tig00011341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60710

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11536--11568
2
16.5
2
100
0
66
51
0
0
48
1.00
12908--13032
36
3.4
37
81
5
139
32
17
10
39
1.84
12944--13045
36
2.8
36
84
10
127
35
18
9
36
1.84
13174--13369
64
3.0
64
79
4
214
29
19
10
40
1.85
13466--13719
131
1.9
131
86
0
355
28
33
15
22
1.95
15536--15597
2
31.0
2
100
0
124
50
0
0
50
1.00
16556--16598
19
2.3
18
81
14
52
46
0
0
53
1.00
16699--16755
18
3.2
18
72
20
57
54
7
1
36
1.38
20285--20321
2
18.5
2
100
0
74
51
0
0
48
1.00
21926--21955
2
15.0
2
100
0
60
50
0
0
50
1.00
22951--23017
28
2.4
25
77
20
71
37
0
4
58
1.19
24623--24667
23
2.0
23
86
0
63
57
15
2
24
1.49
27815--27867
21
2.5
21
76
11
63
37
0
11
50
1.38
27993--28065
31
2.4
30
81
4
83
50
1
10
36
1.46
34727--34771
20
2.3
19
81
11
54
11
11
31
46
1.74
39691--39733
20
2.2
20
86
0
59
34
18
13
32
1.90
45783--45815
9
3.7
9
100
0
66
42
9
12
36
1.74
47584--47621
3
13.0
3
83
5
51
2
28
2
65
1.19
48839--48885
21
2.3
21
88
3
69
12
12
29
44
1.80
49104--49163
20
3.0
20
97
0
111
28
25
16
30
1.97
50912--50939
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!