genome.fa.s5053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005053.1 Hibiscus syriacus cultivar Beakdansim tig00011345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97356

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404--1689	64	4.5	64	88	3	404	36	21	12	29	1.90
1768--1990	109	2.0	109	91	1	358	34	26	13	24	1.93
3185--3253	36	1.9	36	81	0	84	28	8	1	60	1.35
3306--3499	5	39.2	5	69	18	61	14	4	2	78	1.02
3310--3462	33	4.8	30	72	16	96	13	4	2	79	1.00
3292--3426	29	5.2	26	72	20	74	17	3	1	77	0.98
3301--3468	63	2.7	60	83	11	173	14	4	2	79	0.99
3399--3468	22	3.1	22	80	8	86	11	2	2	82	0.88
3300--3468	39	4.3	37	75	20	116	14	4	2	79	0.98
3300--3621	9	34.0	9	67	18	104	13	8	2	76	1.10
3337--3500	4	40.0	4	70	21	65	15	4	2	78	1.02
3564--3603	19	2.2	19	86	4	55	12	5	2	80	0.98
11434--11554	62	2.0	62	98	0	233	37	4	22	36	1.73
19359--19404	24	1.9	24	95	0	83	43	10	8	36	1.71
19715--19779	31	2.1	31	88	0	94	21	26	16	35	1.95
21784--21857	31	2.4	32	81	6	98	28	27	10	33	1.90
22765--22810	15	2.8	17	87	12	69	32	4	32	30	1.77
23379--23465	33	2.6	32	85	10	113	43	35	9	11	1.73
23381--23582	110	1.8	110	89	2	316	38	33	10	18	1.85
23491--23578	33	2.6	33	83	7	115	36	36	11	15	1.84
23553--23620	33	2.2	30	81	7	73	45	22	8	23	1.80
23381--23607	110	2.1	110	84	6	300	39	32	10	18	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23851--23907	26	2.2	26	100	0	114	31	10	22	35	1.88
24695--24856	38	4.3	38	85	6	199	40	11	4	42	1.63
25621--25676	15	3.5	15	72	25	51	19	25	35	19	1.95
25621--25703	34	2.4	34	95	2	148	18	27	33	20	1.96
25635--25729	21	5.0	20	75	20	89	16	28	34	20	1.94
28706--28775	34	2.1	32	86	5	95	22	30	15	31	1.95
29060--29101	21	2.0	21	95	0	75	26	28	21	23	1.99
29217--29298	34	2.4	34	91	2	137	19	28	31	20	1.97
30988--31092	50	2.1	51	89	1	158	42	11	15	30	1.82
32939--32969	2	15.5	2	100	0	62	0	51	0	48	1.00
34577--34614	20	1.9	20	88	0	58	26	10	31	31	1.90
34986--35024	20	2.0	20	85	10	53	33	5	10	51	1.58
35973--36035	26	2.4	26	97	0	117	39	0	6	53	1.26
36028--36070	15	2.7	16	85	10	61	37	0	0	62	0.95
36981--37028	20	2.3	20	76	16	53	41	4	2	52	1.32
43728--43772	6	7.5	6	84	0	54	17	2	44	35	1.62
44537--44599	15	4.0	15	74	25	67	39	28	3	28	1.72
46888--46938	19	2.6	20	90	3	77	43	23	17	15	1.88
46888--47145	20	12.6	20	75	6	115	39	19	22	18	1.92
47136--47175	20	2.0	20	90	0	62	52	17	17	12	1.74
46992--47165	83	2.1	83	84	0	222	37	17	25	20	1.93
47243--47286	6	7.5	6	97	2	81	31	52	15	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47969--48030	6	10.5	6	92	1	99	1	16	51	30	1.54
48108--48151	20	2.2	20	91	0	70	11	18	15	54	1.70
48138--48380	20	11.6	20	70	16	82	18	22	20	39	1.93
48140--48193	28	1.9	28	92	0	90	14	24	24	37	1.93
48167--48255	40	2.2	40	85	0	115	22	25	17	33	1.96
48330--48380	19	2.6	20	90	3	77	15	17	23	43	1.88
49078--49106	13	2.1	14	93	6	51	58	0	0	41	0.98
52166--52640	126	3.8	126	94	1	832	22	26	20	31	1.98
53026--53125	33	3.0	34	83	2	139	39	3	4	54	1.35
53622--53715	21	4.5	21	92	5	129	20	26	35	18	1.95
53719--53766	21	2.3	21	85	0	60	22	12	39	25	1.89
55447--55488	16	2.4	17	80	15	50	61	4	2	30	1.29
55473--55549	33	2.4	31	80	10	93	62	1	0	36	1.04
55500--55562	19	3.6	18	71	16	53	63	3	0	33	1.10
55506--55580	34	2.2	33	80	13	82	65	5	0	29	1.15
56512--56628	60	2.0	60	82	3	146	35	21	3	40	1.70
57934--58056	60	2.0	60	85	0	165	30	17	15	36	1.91
58890--58963	37	2.0	36	82	12	89	50	4	1	44	1.29
62419--62559	40	3.5	41	91	2	232	34	26	16	21	1.95
62499--62631	21	6.5	21	75	14	107	37	27	17	18	1.92
63568--63626	21	2.8	21	78	0	73	22	38	28	10	1.86
63744--63784	21	2.0	21	90	0	64	19	21	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63814--63863	19	2.6	19	96	0	91	22	12	32	34	1.90
74810--74902	35	2.7	35	83	3	116	41	26	2	29	1.67
75020--75115	46	2.1	46	94	0	165	26	9	19	44	1.81
75102--75395	148	2.0	147	90	3	468	36	6	8	48	1.59
75816--76033	103	2.1	103	88	2	323	25	4	27	43	1.74
75983--76115	36	3.7	36	89	3	180	32	1	24	41	1.64
81183--81227	21	2.1	21	87	0	63	31	28	24	15	1.96
81860--81906	23	2.0	24	91	4	78	44	0	21	34	1.52
82122--82277	31	5.0	31	91	1	242	20	20	22	36	1.95
85407--85451	21	2.1	21	87	0	63	31	28	24	15	1.96
86085--86131	23	2.0	24	91	4	78	44	0	21	34	1.52
86346--86500	31	5.0	31	89	3	233	20	20	21	36	1.95
86346--86500	61	2.5	61	89	4	231	20	20	21	36	1.95
93566--94037	155	3.0	158	96	2	871	32	12	31	23	1.91

Tables:   1

The End!