genome.fa.s5054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005054.1 Hibiscus syriacus cultivar Beakdansim tig00011347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43436

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2206--2300	24	4.0	24	76	0	91	53	13	10	22	1.70
6954--7051	24	4.1	24	80	1	99	55	16	7	21	1.65
6955--7016	12	5.3	11	73	21	54	53	19	8	19	1.69
19549--19652	52	2.0	52	100	0	208	28	17	15	38	1.90
23173--23234	32	2.0	32	84	6	83	43	17	19	19	1.88
23812--23913	34	2.9	36	89	5	163	44	13	13	28	1.82
24337--24436	2	51.5	2	81	13	111	44	2	0	54	1.11
24617--24663	24	2.0	24	83	4	60	19	2	2	76	0.99
24843--24876	2	17.0	2	93	0	59	47	0	0	52	1.00
27404--27442	8	5.0	8	84	6	53	10	17	12	58	1.61
28552--28625	7	10.0	7	74	20	62	78	6	14	0	0.95
28549--28638	15	5.9	15	71	13	51	77	6	14	1	1.02
30165--30269	36	2.9	36	91	2	165	24	23	13	38	1.91
30165--30274	37	3.0	37	90	2	168	26	23	12	37	1.91
30285--30371	37	2.4	37	84	1	104	22	20	13	42	1.88
30183--30616	102	4.3	102	93	0	708	28	20	12	37	1.90
30301--30371	37	1.9	37	88	0	106	22	21	12	43	1.86
30489--30575	37	2.4	37	86	5	115	25	21	13	39	1.90
30592--30637	23	2.0	23	86	0	65	23	26	10	39	1.88
30618--30729	36	3.2	36	65	16	101	29	23	13	33	1.93
30613--30762	67	2.2	68	88	5	234	31	24	10	34	1.89
30921--30992	37	1.9	37	82	0	90	26	19	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31596--32354	105	7.3	105	87	4	1006	33	26	17	22	1.96
32889--32988	36	2.9	35	91	5	168	44	14	15	27	1.84
33468--33516	2	24.5	2	100	0	98	48	0	0	51	1.00
33685--33738	13	4.2	12	79	11	63	20	0	1	77	0.86
33692--33737	20	2.2	21	84	3	67	15	0	2	82	0.76
33914--33945	2	16.0	2	100	0	64	50	0	0	50	1.00
36907--37290	41	9.4	41	81	3	319	34	17	20	26	1.95
36908--37337	41	10.5	40	80	6	288	34	18	20	26	1.95
36895--37290	164	2.4	163	79	7	417	34	18	20	27	1.96
37208--37321	40	2.8	40	84	4	140	39	18	12	29	1.87

Tables:   1

The End!