genome.fa.s5055.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005055.1 Hibiscus syriacus cultivar Beakdansim tig00011348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84989

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1529--1673	43	3.4	42	88	3	193	17	24	23	33	1.96
3475--3504	13	2.4	13	94	5	53	13	50	23	13	1.77
6277--6593	43	7.4	43	84	6	392	17	25	23	33	1.96
6288--6625	129	2.6	127	85	3	453	18	24	22	33	1.97
7990--8051	30	2.1	30	87	0	88	24	24	14	37	1.93
14272--14349	30	2.6	30	91	0	129	29	29	11	29	1.92
22814--22863	24	2.1	24	85	3	66	28	12	14	46	1.79
23663--24973	658	2.0	658	87	3	1922	33	18	10	37	1.85
25175--25240	23	2.8	23	93	4	105	36	12	10	40	1.77
32748--32795	24	2.0	23	88	4	69	58	10	12	18	1.62
34294--34335	17	2.5	17	88	0	57	23	19	33	23	1.97
36418--36489	24	3.0	24	81	0	81	52	16	11	19	1.73
37183--37210	13	2.2	13	100	0	56	21	35	7	35	1.81
41797--41911	24	4.8	24	84	4	151	40	19	15	24	1.90
41777--41928	48	3.2	48	75	11	141	44	19	13	23	1.85
41777--41928	72	2.1	71	77	8	155	44	19	13	23	1.85
46461--46592	24	5.5	24	82	7	151	41	19	12	25	1.87
46458--46609	48	3.2	47	76	11	139	44	19	12	24	1.85
46458--46609	72	2.1	71	77	10	157	44	19	12	24	1.85
49022--49083	13	4.4	13	77	18	61	16	17	46	19	1.84
49006--49080	31	2.4	30	80	10	80	20	21	41	17	1.90
49031--49070	18	2.2	18	90	0	62	12	17	50	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49022--49089	31	2.2	31	91	0	109	14	17	47	20	1.83
52209--52386	29	6.1	29	84	3	180	34	20	6	39	1.77
52209--52365	29	5.4	30	89	3	182	33	19	5	40	1.76
65559--65660	3	34.7	3	80	7	120	37	0	0	62	0.95
73785--73815	9	3.6	9	91	8	55	22	22	0	54	1.44
73785--73819	17	2.0	17	88	5	52	25	20	0	54	1.45
77767--77809	21	2.0	21	82	8	52	32	9	2	55	1.44
79119--79644	112	4.6	113	78	10	465	37	13	19	28	1.91
79318--79735	125	3.5	121	78	11	466	37	13	21	27	1.91
79232--79729	237	2.1	235	87	1	721	37	13	20	28	1.91
79968--80034	3	22.7	3	82	14	86	32	0	0	67	0.91
81343--81401	11	5.2	11	72	20	50	30	1	3	64	1.20
82418--82443	13	2.0	13	100	0	52	38	15	30	15	1.88
83734--83772	20	1.9	21	85	15	55	41	10	15	33	1.81

Tables:   1

The End!