genome.fa.s5059.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005059.1 Hibiscus syriacus cultivar Beakdansim tig00011355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80515

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3074--3934	55	15.6	56	89	4	1299	33	11	19	35	1.87
3074--3934	111	7.8	111	89	4	1314	33	11	19	35	1.87
4223--4310	46	1.9	46	92	0	149	44	14	20	20	1.86
7022--7060	20	2.0	20	85	10	53	15	10	5	69	1.34
7321--7366	19	2.6	18	80	16	60	45	0	2	52	1.13
7327--7377	19	2.6	19	87	9	68	43	0	3	52	1.19
8349--8399	23	2.2	24	89	3	77	23	27	21	27	1.99
15151--15206	28	2.0	28	89	0	85	33	14	14	37	1.86
16626--16650	12	2.1	12	100	0	50	24	8	36	32	1.84
18064--18109	15	3.1	15	87	0	65	10	13	30	45	1.77
18778--18840	16	4.1	15	72	9	56	19	17	17	46	1.85
19185--19233	25	1.9	25	84	12	64	75	6	0	18	1.00
19202--19233	13	2.5	13	95	5	57	78	6	0	15	0.95
22211--22371	78	2.1	78	98	0	313	33	12	29	24	1.92
31503--31694	103	1.9	101	95	4	350	36	7	17	38	1.78
31499--31712	104	2.1	100	87	4	329	35	7	19	37	1.79
36094--36458	182	2.0	181	89	0	559	39	22	16	21	1.92
41353--41396	20	2.2	20	87	0	61	43	4	20	31	1.72
45762--45790	14	2.0	15	93	6	51	62	27	0	10	1.28
46123--46154	11	2.9	11	90	0	55	9	0	9	81	0.88
47483--47515	17	1.9	17	93	0	57	45	6	9	39	1.61
48903--49240	137	2.5	137	84	1	410	31	21	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49555--49670	12	10.4	11	75	20	59	70	0	18	10	1.15
49627--49670	10	4.4	10	85	5	54	72	0	15	11	1.11
49627--49681	21	2.7	20	78	10	58	74	0	14	10	1.07
49937--50005	34	2.0	34	82	0	84	33	23	14	28	1.94
50781--51474	116	6.0	115	84	3	817	38	16	21	23	1.93
51184--51247	20	3.2	20	70	12	60	40	12	23	23	1.88
52759--52812	24	2.4	23	80	17	60	9	11	11	68	1.40
58133--58163	15	2.1	15	93	0	53	29	6	22	41	1.78
58156--58257	42	2.4	42	96	0	186	30	12	26	30	1.93
60427--60528	42	2.4	41	80	9	116	34	24	14	26	1.94
65075--65436	45	8.1	45	85	0	483	26	21	4	47	1.70
65677--65807	55	2.4	55	84	2	165	27	19	19	33	1.96
65805--66123	54	5.9	54	90	0	503	34	19	18	28	1.95
66450--66500	19	2.5	19	87	9	66	29	19	17	33	1.95
66490--66541	20	2.6	19	87	6	77	19	30	15	34	1.93
70848--70966	22	5.4	21	66	18	80	27	22	4	45	1.71
70842--71203	45	8.1	45	90	0	555	25	22	5	46	1.74
71470--71767	55	5.4	55	84	4	334	27	18	18	36	1.94
72946--73031	44	2.0	44	97	0	163	33	12	32	20	1.91
73639--73745	42	2.6	41	80	1	106	28	21	16	32	1.95
73904--74004	42	2.3	42	83	8	114	21	25	20	31	1.98
73638--74471	265	3.3	261	83	5	965	29	18	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74033--74476	240	1.8	241	89	1	694	30	16	20	31	1.95
74892--74935	3	14.7	3	100	0	88	31	0	0	68	0.90
79237--79267	14	2.2	14	100	0	62	32	19	6	41	1.77

Tables:   1

The End!