genome.fa.s506.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000506.1 Hibiscus syriacus cultivar Beakdansim tig00000963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89512

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190--225	2	18.0	2	100	0	72	50	0	0	50	1.00
17316--17388	21	3.5	21	69	10	69	36	21	16	24	1.94
17294--17388	41	2.3	41	80	3	111	38	20	16	24	1.92
17536--17586	22	2.3	22	89	0	75	23	43	13	19	1.87
17964--18012	19	2.6	19	100	0	98	10	16	24	48	1.76
18017--18066	20	2.5	20	96	0	91	24	20	24	32	1.98
17961--18108	20	7.8	20	78	13	71	15	16	20	46	1.84
20026--20074	20	2.5	20	86	0	62	36	24	18	20	1.94
20134--20183	19	2.6	19	81	6	57	18	18	22	42	1.90
20146--20184	19	2.0	20	90	5	62	12	15	20	51	1.76
20214--20257	20	2.2	20	95	0	79	18	20	22	38	1.93
20753--20856	21	5.0	20	73	8	82	20	33	19	26	1.96
20749--20871	42	2.9	42	77	7	133	21	34	18	25	1.96
22235--22271	14	2.6	14	100	0	74	29	0	21	48	1.50
22268--22379	36	3.4	35	70	21	114	27	2	16	53	1.56
22249--22380	63	2.1	63	97	0	246	28	2	16	53	1.55
22470--22530	20	3.0	20	87	0	95	47	22	18	11	1.80
22569--22679	20	5.8	20	75	12	108	27	18	20	33	1.96
22520--22679	74	2.2	74	85	3	207	26	19	20	33	1.96
22850--22884	18	1.9	18	94	0	61	17	2	25	54	1.57
24920--24946	14	1.9	14	100	0	54	7	18	29	44	1.77
24921--24953	14	2.5	13	90	9	50	6	21	24	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25162--25213	24	2.2	24	82	0	59	36	21	19	23	1.95
26098--26158	20	3.0	21	68	22	56	34	16	22	26	1.95
26175--26211	19	1.9	19	88	0	56	21	13	29	35	1.92
29048--29492	230	1.9	227	94	1	782	45	7	7	39	1.60
29724--29770	20	2.4	19	79	10	58	55	8	17	19	1.67
32314--32360	14	3.3	14	80	16	60	53	0	42	4	1.20
33905--33948	19	2.4	19	92	3	72	31	2	9	56	1.43
34032--35447	198	7.1	199	97	0	2583	37	15	15	32	1.88
34032--35447	397	3.6	397	96	0	2597	37	15	15	32	1.88
34032--35447	595	2.4	595	97	0	2633	37	15	15	32	1.88
36917--37008	12	7.4	12	80	7	76	35	7	34	21	1.82
36914--37008	6	15.3	6	75	6	55	36	7	34	21	1.81
36929--37011	15	5.7	15	80	8	91	36	6	34	22	1.79
36925--37008	27	3.1	27	84	0	114	35	7	34	22	1.82
38379--39230	183	4.7	184	97	1	1604	35	14	15	34	1.89
41788--41850	23	2.7	23	90	0	90	36	6	19	38	1.77
41788--41860	23	3.2	23	86	3	85	35	5	19	39	1.75
42217--42279	23	2.7	23	90	0	90	36	6	19	38	1.77
42217--42289	23	3.2	23	86	3	85	35	5	19	39	1.75
42646--42711	23	2.9	23	90	0	96	34	7	18	39	1.79
42915--42951	18	2.1	18	89	0	56	32	5	10	51	1.60
50215--50246	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50495--50532	19	2.0	19	89	0	58	52	0	7	39	1.31
51703--51741	3	13.0	3	100	0	78	66	0	0	33	0.92
51732--51782	20	2.5	20	81	15	59	66	3	11	17	1.38
51829--51875	3	15.7	3	100	0	94	68	0	0	31	0.90
51889--51929	14	2.8	15	86	13	59	75	2	9	12	1.13
51827--51957	9	14.4	9	74	15	67	72	1	3	22	1.09
51828--51950	15	8.1	15	76	15	67	73	1	4	21	1.09
52002--52039	13	3.2	12	85	11	51	71	2	7	18	1.23
52842--52911	21	3.3	20	77	20	63	41	7	5	45	1.55
53601--54451	84	10.1	84	85	0	1040	24	18	24	33	1.97
53601--54477	252	3.5	251	88	1	1191	24	18	24	33	1.97
54489--54851	124	2.9	123	91	2	557	26	15	24	32	1.96
55985--56251	99	2.7	98	90	2	403	33	16	17	32	1.93
67920--67963	17	2.6	17	96	0	79	31	29	20	18	1.96
72048--72121	8	9.1	8	73	8	51	77	1	4	17	1.00
72050--72105	13	4.6	12	76	17	53	76	1	1	19	0.96
72050--72109	4	14.8	4	77	16	61	76	1	1	20	0.96
72103--72156	12	4.2	12	90	9	81	75	1	14	7	1.09
73073--73119	2	25.0	2	79	12	55	46	2	2	48	1.25
79201--79347	21	6.8	21	81	7	116	23	14	23	38	1.91
79269--79361	23	4.1	23	82	8	111	20	15	25	38	1.91
79252--79352	44	2.3	44	87	3	141	19	15	27	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79567--79627	21	2.8	21	87	5	77	37	1	26	34	1.66
80178--80207	13	2.3	13	100	0	60	36	23	23	16	1.94
80191--80226	18	1.9	19	94	5	65	33	22	22	22	1.97
80238--80286	20	2.5	20	82	0	62	26	20	24	28	1.99
81837--81890	21	2.5	21	82	8	65	29	16	24	29	1.97
82761--82839	26	2.9	28	81	7	108	16	16	27	39	1.90
87635--87660	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!