genome.fa.s5061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005061.1 Hibiscus syriacus cultivar Beakdansim tig00011362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94084

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129--164	6	6.0	6	100	0	72	33	50	16	0	1.46
773--862	40	2.3	39	90	3	137	32	24	20	23	1.98
876--927	19	2.7	20	96	3	97	44	23	23	9	1.82
2180--2240	28	2.2	28	81	0	68	55	3	3	37	1.32
2274--2307	16	2.1	17	94	5	61	55	0	0	44	0.99
2534--2562	14	2.1	14	100	0	58	41	6	10	41	1.66
19013--19053	7	5.9	7	78	21	50	31	0	0	68	0.90
19013--19055	21	2.0	21	86	8	61	34	0	0	65	0.93
19560--19590	2	15.5	2	100	0	62	48	0	0	51	1.00
27045--27080	18	1.9	19	88	5	56	66	0	2	30	1.06
27508--27571	16	4.0	16	73	16	53	40	1	0	57	1.08
28074--28422	20	17.5	20	84	4	418	34	26	18	20	1.95
29096--29142	24	2.0	24	87	8	69	25	14	21	38	1.92
29317--29341	12	2.1	12	100	0	50	72	0	28	0	0.86
31642--31966	19	18.4	19	80	16	396	47	17	20	14	1.83
31642--31966	33	9.2	34	81	14	312	47	17	20	14	1.83
31670--31988	160	2.0	157	94	3	559	46	16	21	14	1.83
31670--31988	52	6.0	52	94	3	557	46	16	21	14	1.83
31995--32096	19	5.6	19	82	12	142	15	23	16	44	1.86
32202--32238	14	2.6	14	91	0	65	45	21	0	32	1.52
32233--32305	12	6.0	12	67	20	53	57	16	1	24	1.47
32219--32291	38	1.9	38	97	0	137	53	16	1	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34108--34223	19	6.6	19	75	19	117	45	23	19	11	1.82
34145--34201	14	3.7	14	77	20	60	45	24	21	8	1.80
34126--34218	33	2.8	33	98	0	177	47	22	20	9	1.79
34219--34347	19	7.3	19	75	17	125	8	17	28	45	1.77
34219--34310	33	2.8	33	93	3	150	7	18	28	45	1.76
34391--34769	93	4.1	93	98	1	735	46	18	12	22	1.83
34391--34769	185	2.0	185	98	1	733	46	18	12	22	1.83
36471--36560	14	5.7	14	74	23	81	42	23	25	8	1.83
36463--36577	33	3.5	33	95	0	212	45	20	24	9	1.81
36470--36582	19	6.8	18	72	23	88	43	22	24	9	1.83
36594--36648	14	3.6	14	73	21	56	9	27	23	40	1.85
36769--36839	33	2.2	33	92	0	115	47	18	22	11	1.80
37020--37074	22	2.5	22	81	0	74	20	16	40	23	1.91
37220--37393	20	8.6	20	83	5	217	19	19	26	34	1.96
37222--37393	60	2.8	60	84	0	245	19	19	26	34	1.96
37386--37462	21	3.7	20	70	13	57	27	16	23	32	1.96
37448--37499	20	2.6	20	96	0	95	21	13	26	38	1.90
40686--40780	9	10.0	9	73	15	75	15	25	27	31	1.96
40687--40774	19	4.6	18	79	14	63	15	23	27	32	1.95
40686--40780	28	3.3	28	76	8	84	15	25	27	31	1.96
40768--40810	19	2.3	19	79	0	50	20	44	23	11	1.84
49123--49162	20	2.0	20	90	0	62	20	27	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52273--52330	20	2.9	20	97	0	107	20	29	13	36	1.91
56398--56428	2	15.5	2	93	0	53	54	0	0	45	0.99
62951--62975	12	2.1	12	100	0	50	36	40	8	16	1.77
70545--70585	21	2.0	21	85	4	57	46	9	0	43	1.36
72900--72924	2	12.5	2	100	0	50	52	0	48	0	1.00
73809--73872	27	2.5	27	82	9	73	42	6	0	51	1.27
74815--74848	18	1.9	18	88	5	52	26	29	26	17	1.98
76231--76268	18	2.2	17	90	4	58	47	0	2	50	1.15
78425--78467	13	3.5	12	81	12	52	25	2	2	69	1.12
80929--80956	2	14.0	2	100	0	56	50	0	0	50	1.00
82571--82599	2	14.5	2	100	0	58	48	0	0	51	1.00
82771--82823	21	2.5	21	93	0	88	28	30	22	18	1.98
82837--82879	21	2.0	21	86	0	59	23	23	27	25	2.00
82964--82990	6	4.5	6	100	0	54	33	51	14	0	1.43
83588--83860	42	6.5	42	92	2	433	35	23	19	20	1.95
83617--83866	21	12.0	21	74	14	214	35	24	19	20	1.96
93175--93199	11	2.3	11	100	0	50	32	0	12	56	1.36

Tables:   1

The End!