Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005062.1 Hibiscus syriacus cultivar Beakdansim tig00011366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94022
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:3419 original size:2 final size:2
Alignment explanation
Indices: 3412--3436 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3402 CTATAATTTA
3412 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
3437 CACACACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14179 original size:24 final size:24
Alignment explanation
Indices: 14128--14180 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
14118 TTTTATATAA
** *
14128 ATTTTTAAAAAAATAAAATTATAT
1 ATTTTTAAAAAAATAAAAACATAC
14152 ATTTTTAAAAAAGA-AAAAACATAC
1 ATTTTTAAAAAA-ATAAAAACATAC
14176 ATTTT
1 ATTTT
14181 GAAATAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (24 bp):
ATTTTTAAAAAAATAAAAACATAC
Found at i:20433 original size:14 final size:14
Alignment explanation
Indices: 20414--20442 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
20404 GTTTGACAGC
20414 CGAAAAATATTTTT
1 CGAAAAATATTTTT
20428 CGAAAAATATTTTT
1 CGAAAAATATTTTT
20442 C
1 C
20443 TCATTTTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (14 bp):
CGAAAAATATTTTT
Found at i:22115 original size:20 final size:20
Alignment explanation
Indices: 22090--22246 Score: 100
Period size: 20 Copynumber: 7.7 Consensus size: 20
22080 CTATCGCAAA
*
22090 TTCGCGTTGCGATTTTTCAT
1 TTCGCGTTGCGATTTTCCAT
22110 TTCGCGTTGCGATTTTCCAT
1 TTCGCGTTGCGATTTTCCAT
* * *
22130 TTCGCGTTGCGATAGTCTACAG
1 TTCGCGTTGCGAT--TTTCCAT
* ** *
22152 TT-GTCGTTGCGATAGTTGAAA
1 TTCG-CGTTGCGAT-TTTCCAT
* ***
22173 ATCGCAACGCGATTTTCCAT
1 TTCGCGTTGCGATTTTCCAT
* ** *
22193 TTCGCGTTGCGATAGTTGAAA
1 TTCGCGTTGCGAT-TTTCCAT
* *
22214 ATCGCATTGCGATTTTCCAT
1 TTCGCGTTGCGATTTTCCAT
22234 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
22247 AGTATCTTTC
Statistics
Matches: 98, Mismatches: 34, Indels: 10
0.69 0.24 0.07
Matches are distributed among these distances:
20 58 0.59
21 24 0.24
22 16 0.16
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (20 bp):
TTCGCGTTGCGATTTTCCAT
Found at i:22205 original size:41 final size:41
Alignment explanation
Indices: 22156--22249 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
22146 CTACAGTTGT
22156 CGTTGCGATAGTTGAAAATCGCAACGCGATTTTCCATTTCG
1 CGTTGCGATAGTTGAAAATCGCAACGCGATTTTCCATTTCG
**
22197 CGTTGCGATAGTTGAAAATCGCATTGCGATTTTCCATTTCG
1 CGTTGCGATAGTTGAAAATCGCAACGCGATTTTCCATTTCG
22238 CGTTGCGATAGT
1 CGTTGCGATAGT
22250 ATCTTTCTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (41 bp):
CGTTGCGATAGTTGAAAATCGCAACGCGATTTTCCATTTCG
Found at i:22223 original size:21 final size:21
Alignment explanation
Indices: 22158--22226 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
22148 ACAGTTGTCG
22158 TTGCGATAGTTGAAAATCGCA
1 TTGCGATAGTTGAAAATCGCA
** * ** ** *
22179 ACGCGAT-TTTCCATTTCGCG
1 TTGCGATAGTTGAAAATCGCA
22199 TTGCGATAGTTGAAAATCGCA
1 TTGCGATAGTTGAAAATCGCA
22220 TTGCGAT
1 TTGCGAT
22227 TTTCCATTTC
Statistics
Matches: 31, Mismatches: 16, Indels: 2
0.63 0.33 0.04
Matches are distributed among these distances:
20 12 0.39
21 19 0.61
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (21 bp):
TTGCGATAGTTGAAAATCGCA
Found at i:22377 original size:6 final size:6
Alignment explanation
Indices: 22366--22390 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22356 GACACGTATT
22366 ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG A
22391 GACGAGACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:22881 original size:6 final size:6
Alignment explanation
Indices: 22872--22907 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
22862 CGCCGCCGTC
22872 CGTGGT CGTGGT CGTGGT CGTGGT CGTGGT CGTGGT
1 CGTGGT CGTGGT CGTGGT CGTGGT CGTGGT CGTGGT
22908 AATACGTGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (6 bp):
CGTGGT
Found at i:23965 original size:18 final size:20
Alignment explanation
Indices: 23931--23967 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
23921 TAAATTATCA
23931 ATTTTTATATATTTTTTAAT
1 ATTTTTATATATTTTTTAAT
23951 ATTTTTAT-T-TTTTTTAA
1 ATTTTTATATATTTTTTAA
23968 ATAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
ATTTTTATATATTTTTTAAT
Found at i:60863 original size:31 final size:31
Alignment explanation
Indices: 60828--60906 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
60818 ATAAAGGTGG
* *
60828 AGTGATCATTTTGTTACAAATCGATAACATT
1 AGTGACCATTTTGTTACAAATCAATAACATT
*
60859 AGTGACCATTTTGTTACAAATCAATAACGTT
1 AGTGACCATTTTGTTACAAATCAATAACATT
*
60890 AGTGACCAATTTGTTAC
1 AGTGACCATTTTGTTAC
60907 TTTTAAAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (31 bp):
AGTGACCATTTTGTTACAAATCAATAACATT
Found at i:66035 original size:25 final size:23
Alignment explanation
Indices: 66007--66069 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
65997 ATTTAAAATT
66007 TATTGAATTTTAAAATATTAATGGG
1 TATT-AATTTTAAAAT-TTAATGGG
* *
66032 TATT-ATATTAAAATTTATTGGG
1 TATTAATTTTAAAATTTAATGGG
* *
66054 CATTAATATTTTAAAT
1 TATTAAT-TTTAAAAT
66070 GAGTCTATAG
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 10 0.32
23 11 0.35
24 6 0.19
25 4 0.13
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.48
Consensus pattern (23 bp):
TATTAATTTTAAAATTTAATGGG
Found at i:66058 original size:22 final size:24
Alignment explanation
Indices: 66016--66063 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
66006 TTATTGAATT
*
66016 TTAAAATATTAATGGGTATT-ATA
1 TTAAAATATTAATGGGCATTAATA
*
66039 TTAAAAT-TTATTGGGCATTAATA
1 TTAAAATATTAATGGGCATTAATA
66062 TT
1 TT
66064 TTAAATGAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (24 bp):
TTAAAATATTAATGGGCATTAATA
Found at i:69486 original size:2 final size:2
Alignment explanation
Indices: 69479--69522 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
69469 AACTAAAAAT
69479 TA TA TA TA TA TA TA -A T- TA TA TA TA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
69518 TA TA T
1 TA TA T
69523 TTATGGTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
1 3 0.08
2 36 0.92
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73643 original size:31 final size:32
Alignment explanation
Indices: 73600--73666 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
73590 AAAGTTTAGA
* **
73600 TTTTGTTTCATTTTAATACCCGTC-GTTAACT
1 TTTTATTTCATTTTAATACCCCACTGTTAACT
*
73631 TTTTATTTCATTTTAGTACCCCACTGTTAACT
1 TTTTATTTCATTTTAATACCCCACTGTTAACT
73663 TTTT
1 TTTT
73667 TGCTTCGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 20 0.65
32 11 0.35
ACGTcount: A:0.19, C:0.19, G:0.07, T:0.54
Consensus pattern (32 bp):
TTTTATTTCATTTTAATACCCCACTGTTAACT
Found at i:73665 original size:32 final size:30
Alignment explanation
Indices: 73600--73683 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 30
73590 AAAGTTTAGA
* * **
73600 TTTTGTTTCATTTTAATACCCGTCGTTAAC
1 TTTTTTTTCATTTTAGTACCCCACGTTAAC
73630 TTTTTATTTCATTTTAGTACCCCACTGTTAAC
1 TTTTT-TTTCATTTTAGTACCCCAC-GTTAAC
*
73662 TTTTTTGCTTCGTTTTAGTACC
1 TTTTTT--TTCATTTTAGTACC
73684 TAAATTTTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
30 4 0.09
31 17 0.38
32 11 0.24
33 13 0.29
ACGTcount: A:0.18, C:0.20, G:0.10, T:0.52
Consensus pattern (30 bp):
TTTTTTTTCATTTTAGTACCCCACGTTAAC
Found at i:75257 original size:17 final size:17
Alignment explanation
Indices: 75232--75265 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75222 GATCCAACTC
*
75232 AAAATAATATATTTATT
1 AAAAAAATATATTTATT
*
75249 AAAAAAATATTTTTATT
1 AAAAAAATATATTTATT
75266 CAATAAAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAAAAATATATTTATT
Found at i:81066 original size:2 final size:2
Alignment explanation
Indices: 81061--81126 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
81051 GTGTGTGTGT
81061 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
81103 GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA
81127 AGAAGTCACG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:83910 original size:18 final size:20
Alignment explanation
Indices: 83870--83914 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
83860 ATCGGTAAAA
83870 TTTTATTTAAAATATTATTATT
1 TTTTATTTAAAATA-TA-TATT
83892 TTTTATTTAAAATA-A-ATT
1 TTTTATTTAAAATATATATT
83910 TTTTA
1 TTTTA
83915 ATATTTTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.35
20 1 0.04
22 14 0.61
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTATTTAAAATATATATT
Found at i:85599 original size:47 final size:48
Alignment explanation
Indices: 85546--85641 Score: 185
Period size: 47 Copynumber: 2.0 Consensus size: 48
85536 TTTTAGTTTT
85546 TGAAATTTAATCTAGTCATTCATACTCTTAAAATCGATC-AACAATTA
1 TGAAATTTAATCTAGTCATTCATACTCTTAAAATCGATCAAACAATTA
85593 TGAAATTTAATCTAGTCATTCATACTCTTAAAATCGATCAAACAATTA
1 TGAAATTTAATCTAGTCATTCATACTCTTAAAATCGATCAAACAATTA
85641 T
1 T
85642 TTATGTCCTC
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 39 0.81
48 9 0.19
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.36
Consensus pattern (48 bp):
TGAAATTTAATCTAGTCATTCATACTCTTAAAATCGATCAAACAATTA
Found at i:86710 original size:12 final size:12
Alignment explanation
Indices: 86693--86814 Score: 127
Period size: 12 Copynumber: 9.9 Consensus size: 12
86683 ACCTGCTAAA
86693 GAAGAGAAGAAG
1 GAAGAGAAGAAG
86705 GAAGAGAAGAAG
1 GAAGAGAAGAAG
* *
86717 GAAGAAAAGAAA
1 GAAGAGAAGAAG
*
86729 GAGGAGAAGAAG
1 GAAGAGAAGAAG
*
86741 GAGGAGAAGAAGAAA
1 GA--AG-AGAAGAAG
*
86756 GAGGAGAAGAAG
1 GAAGAGAAGAAG
*
86768 GAAGAGAAGAAA
1 GAAGAGAAGAAG
* * *
86780 GAGGAAAAGAAA
1 GAAGAGAAGAAG
86792 GAAGAGAAGAAG
1 GAAGAGAAGAAG
*
86804 GAAGAAAAGAA
1 GAAGAGAAGAA
86815 ATGATTTCTG
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
12 79 0.88
13 1 0.01
14 1 0.01
15 9 0.10
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (12 bp):
GAAGAGAAGAAG
Found at i:86726 original size:24 final size:24
Alignment explanation
Indices: 86693--86802 Score: 148
Period size: 24 Copynumber: 4.5 Consensus size: 24
86683 ACCTGCTAAA
* *
86693 GAAGAGAAGAAGGAAGAGAAGAAG
1 GAAGAGAAGAAAGAGGAGAAGAAG
*
86717 GAAGAAAAGAAAGAGGAGAAGAAG
1 GAAGAGAAGAAAGAGGAGAAGAAG
86741 GAGGAGAAGAAGAAAGAGGAGAAGAAG
1 GA--AG-AGAAGAAAGAGGAGAAGAAG
* *
86768 GAAGAGAAGAAAGAGGAAAAGAAA
1 GAAGAGAAGAAAGAGGAGAAGAAG
86792 GAAGAGAAGAA
1 GAAGAGAAGAA
86803 GGAAGAAAAG
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
24 52 0.68
25 2 0.03
26 2 0.03
27 21 0.27
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (24 bp):
GAAGAGAAGAAAGAGGAGAAGAAG
Found at i:86736 original size:36 final size:35
Alignment explanation
Indices: 86690--86814 Score: 149
Period size: 36 Copynumber: 3.7 Consensus size: 35
86680 CGGACCTGCT
86690 AAAGAAGAGAAGAAGGAAGAGAAGAAGGAAGAAAAG
1 AAAGAAGAGAAGAAGGAAGAGAAGAA-GAAGAAAAG
*
86726 AAAGAGGAGAAGAAGG-AG-G-AGAAGAAG-AAAG
1 AAAGAAGAGAAGAAGGAAGAGAAGAAGAAGAAAAG
*
86757 --AG--GAGAAGAAGGAAGAGAAGAAAGAGGAAAAG
1 AAAGAAGAGAAGAAGGAAGAGAAG-AAGAAGAAAAG
*
86789 AAAGAAGAGAAGAAGGAAGAAAAGAA
1 AAAGAAGAGAAGAAGGAAGAGAAGAA
86815 ATGATTTCTG
Statistics
Matches: 77, Mismatches: 3, Indels: 19
0.78 0.03 0.19
Matches are distributed among these distances:
27 10 0.13
28 2 0.03
29 3 0.04
30 2 0.03
31 9 0.12
32 8 0.10
33 4 0.05
34 3 0.04
35 4 0.05
36 32 0.42
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (35 bp):
AAAGAAGAGAAGAAGGAAGAGAAGAAGAAGAAAAG
Found at i:86771 original size:4 final size:5
Alignment explanation
Indices: 86692--86801 Score: 59
Period size: 5 Copynumber: 21.2 Consensus size: 5
86682 GACCTGCTAA
* *
86692 AGAAG AGAAG AAGGAAG AGAAG AAGGAAG AAAAG A-AAG AGGAG AAGAAG
1 AGAAG AGAAG -A-GAAG AGAAG -A-GAAG AGAAG AGAAG AGAAG -AGAAG
* * *
86741 -GAGG AGAAG AAGAA- AGAGG AGAAG AAGGAAG AGAAG A-AAG AGGAAA
1 AGAAG AGAAG -AGAAG AGAAG AGAAG -A-GAAG AGAAG AGAAG A-GAAG
86787 AGAA- AGAAG AGAAG A
1 AGAAG AGAAG AGAAG A
86802 AGGAAGAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 28
0.70 0.07 0.24
Matches are distributed among these distances:
4 18 0.22
5 36 0.43
6 17 0.20
7 12 0.14
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:91229 original size:20 final size:21
Alignment explanation
Indices: 91189--91229 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
91179 ACATATCCAA
*
91189 ATATTTTTATCTTTATAACAT
1 ATATTTATATCTTTATAACAT
*
91210 ATATTTATAT-TTTATGACAT
1 ATATTTATATCTTTATAACAT
91230 TTTTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (21 bp):
ATATTTATATCTTTATAACAT
Found at i:91850 original size:14 final size:14
Alignment explanation
Indices: 91831--91860 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91821 GATATAAATA
91831 AATAAAAGTTATAT
1 AATAAAAGTTATAT
*
91845 AATAAAATTTATAT
1 AATAAAAGTTATAT
91859 AA
1 AA
91861 AATTCAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (14 bp):
AATAAAAGTTATAT
Found at i:93296 original size:155 final size:155
Alignment explanation
Indices: 93000--93317 Score: 586
Period size: 155 Copynumber: 2.1 Consensus size: 155
92990 GACGTCCCTG
*
93000 ATTTTGAACCTGCTCTGTTTCCACTTCGGTTGCAGTTCCAGAGCCAGGACCGTGTACCTTCGACA
1 ATTTTGACCCTGCTCTGTTTCCACTTCGGTTGCAGTTCCAGAGCCAGGACCGTGTACCTTCGACA
*
93065 TGACGGTTGTTCCCGCTCCGGCAGCTTCCTCGTAAACTGGACTTGGTTTATCCGCCTTTCCATAA
66 TGACGGTGGTTCCCGCTCCGGCAGCTTCCTCGTAAACTGGACTTGGTTTATCCGCCTTTCCATAA
93130 TCCATTGCGATTCTTGCTTGGTTGT
131 TCCATTGCGATTCTTGCTTGGTTGT
93155 ATTTTGACCCTGCTCTGTTTCCACTTCGGTTGCAGTTCCAGAGCCAGGACCGTGTACCTTCGACA
1 ATTTTGACCCTGCTCTGTTTCCACTTCGGTTGCAGTTCCAGAGCCAGGACCGTGTACCTTCGACA
*
93220 TGACGGTGGTTCCCGCTCCGGCAGCTTCCTCGTAAA-TGGACTTGGTTTATCCGTCTTTCCATAA
66 TGACGGTGGTTCCCGCTCCGGCAGCTTCCTCGTAAACTGGACTTGGTTTATCCGCCTTTCCATAA
93284 TCCATTGCCGATTCTTGCTTGGTTGT
131 TCCATTG-CGATTCTTGCTTGGTTGT
93310 A-TTTGACC
1 ATTTTGACC
93318 TTCACTTGAT
Statistics
Matches: 159, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 41 0.26
155 118 0.74
ACGTcount: A:0.15, C:0.28, G:0.22, T:0.34
Consensus pattern (155 bp):
ATTTTGACCCTGCTCTGTTTCCACTTCGGTTGCAGTTCCAGAGCCAGGACCGTGTACCTTCGACA
TGACGGTGGTTCCCGCTCCGGCAGCTTCCTCGTAAACTGGACTTGGTTTATCCGCCTTTCCATAA
TCCATTGCGATTCTTGCTTGGTTGT
Done.