genome.fa.s5063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005063.1 Hibiscus syriacus cultivar Beakdansim tig00011367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72325

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642--732	45	2.0	46	93	2	157	26	18	26	28	1.98
7340--7379	21	1.9	21	85	10	55	35	10	2	52	1.48
9371--9495	19	6.6	19	99	0	241	22	16	29	31	1.96
9523--9560	20	1.9	20	88	0	58	18	13	34	34	1.89
10365--10435	27	2.7	26	84	4	99	42	4	15	38	1.67
10365--10428	25	2.5	25	87	5	83	43	3	17	35	1.65
16495--16536	19	2.0	21	82	17	52	64	9	7	19	1.46
19695--19739	18	2.6	17	82	10	56	26	24	8	40	1.84
20004--20048	23	2.0	23	86	0	63	42	6	15	35	1.73
20485--21437	363	2.6	364	92	0	1574	26	15	13	44	1.84
20485--21436	182	5.3	182	87	3	1357	26	15	13	44	1.84
21973--22014	19	2.2	19	87	8	59	28	21	11	38	1.89
26085--26115	7	4.4	7	100	0	62	61	12	0	25	1.32
28177--28228	24	2.2	24	92	0	86	11	17	11	59	1.60
33360--33387	13	2.2	13	100	0	56	35	14	14	35	1.86
38523--38560	20	1.9	19	89	5	58	42	5	28	23	1.76
40648--40731	5	16.8	5	91	4	116	80	14	4	0	0.86
41282--41338	21	2.8	21	78	7	55	33	14	7	45	1.71
42697--43509	210	3.8	213	92	1	1232	50	7	11	30	1.67
42697--43509	426	1.9	425	88	4	1248	50	7	11	30	1.67
43585--43735	2	79.5	2	68	19	74	47	1	3	47	1.26
43584--43702	11	10.6	11	66	16	66	48	1	2	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43739--43797	7	8.4	7	76	0	64	18	0	37	44	1.50
43739--43797	21	2.8	21	86	0	73	18	0	37	44	1.50
43820--43983	22	7.4	20	75	18	148	38	6	1	53	1.36
43844--43969	22	5.4	25	77	18	155	38	6	2	53	1.40
43822--43983	45	3.6	45	98	0	306	38	6	1	53	1.37
43941--44019	33	2.4	33	83	8	90	40	8	6	44	1.61
44040--44121	35	2.3	36	87	10	125	41	8	6	43	1.60
44040--44121	18	4.7	18	80	10	98	41	8	6	43	1.60
44134--44255	22	5.8	21	70	18	85	41	5	7	45	1.56
44187--44269	2	39.0	2	75	20	71	45	4	3	45	1.42
44110--44269	22	7.8	20	68	24	79	41	6	6	45	1.56
43992--44269	61	4.6	60	73	17	195	41	7	7	43	1.60
44186--44270	22	4.0	21	78	20	86	45	5	3	44	1.45
44221--44291	34	2.2	31	85	7	88	47	7	2	42	1.45
44317--44400	35	2.4	34	90	4	123	45	5	4	44	1.49
44340--44435	44	2.2	44	81	12	117	48	5	2	43	1.36
44483--44604	34	3.8	33	68	21	91	50	4	8	37	1.52
47666--47704	20	2.0	20	84	0	51	48	2	0	48	1.15
47837--47904	16	4.2	16	81	12	86	47	13	19	20	1.82
47842--47903	32	1.9	32	93	0	106	46	12	17	22	1.82
51287--51335	25	2.0	25	95	0	89	26	10	24	38	1.87
53803--53875	37	2.0	37	83	5	94	26	13	5	54	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54023--54086	31	2.0	33	84	6	87	56	1	3	39	1.25
54401--54516	31	3.7	31	88	3	162	17	17	9	56	1.67
55429--55570	65	2.3	63	77	15	161	51	11	1	35	1.47
61573--61655	29	2.9	29	75	0	85	18	18	16	46	1.84
62197--62225	2	14.5	2	100	0	58	51	0	0	48	1.00
66698--67121	38	11.4	38	81	10	434	43	8	3	44	1.52
66675--67121	74	6.0	73	78	14	366	43	8	3	43	1.53
67515--67560	23	2.0	23	86	0	65	50	17	19	13	1.78
68070--68146	10	7.7	10	70	18	54	42	1	3	51	1.28
68089--68153	30	2.2	29	88	5	94	41	1	3	53	1.25
68070--68150	29	2.7	29	81	11	92	40	1	3	54	1.26
70057--70098	21	2.0	21	100	0	84	23	14	33	28	1.94

Tables:   1

The End!