genome.fa.s5064.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005064.1 Hibiscus syriacus cultivar Beakdansim tig00011368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46179

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7878--7962	24	3.5	24	91	0	143	37	14	28	20	1.91
9715--9761	24	2.0	24	86	0	67	19	6	12	61	1.52
13099--13143	21	2.1	21	87	0	63	31	28	24	15	1.96
13969--14122	31	5.0	31	93	1	256	22	20	20	37	1.95
17083--17127	21	2.1	21	87	0	63	31	28	24	15	1.96
17991--18082	31	3.0	31	87	3	132	21	20	21	35	1.96
19551--19593	21	2.1	21	95	4	79	30	11	13	44	1.80
19709--19833	44	2.8	44	91	0	205	40	13	16	29	1.87
19801--19852	14	3.6	14	71	7	50	32	7	21	38	1.82
19944--20029	23	3.9	22	77	7	93	18	23	25	32	1.97
20025--20074	24	2.1	24	84	0	64	12	16	22	50	1.77
21627--21687	24	2.7	22	72	20	54	50	3	0	45	1.17
25643--25731	44	2.0	44	97	0	169	57	7	16	17	1.63
31165--31235	20	3.5	20	80	3	72	32	25	18	23	1.97
31279--31370	19	4.7	20	78	8	82	34	22	13	29	1.92
31344--31390	18	2.6	18	82	3	58	31	23	12	31	1.92
32120--32153	12	2.8	12	90	0	50	55	29	0	14	1.40
33398--33448	20	2.5	20	100	0	102	37	21	19	21	1.95
33672--33708	18	2.1	18	89	0	56	32	5	10	51	1.60
34010--34098	39	2.3	39	90	0	151	46	20	14	19	1.84
36666--36706	20	2.0	20	95	0	73	19	19	24	36	1.95
36674--36746	20	3.7	19	75	12	67	21	16	31	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37416--37454	17	2.4	17	95	4	71	43	0	5	51	1.24
38859--38889	15	2.1	15	93	0	53	45	0	0	54	0.99
39775--39875	53	1.9	53	90	8	161	46	6	0	46	1.29
39775--39875	27	3.8	27	93	5	163	46	6	0	46	1.29
40102--40267	80	2.1	80	84	3	210	44	18	9	27	1.80
40102--40329	79	2.9	80	78	5	221	45	16	9	28	1.78
42131--42214	36	2.3	36	93	0	141	41	4	15	38	1.68
44046--44170	31	4.0	31	80	5	135	32	20	18	28	1.96
44047--44173	63	2.0	62	86	4	175	31	21	18	29	1.96
45265--45420	63	2.5	63	76	13	151	26	19	20	33	1.96

Tables:   1

The End!