Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005065.1 Hibiscus syriacus cultivar Beakdansim tig00011370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48158

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8081--8207
60
2.1
61
82
8
152
32
18
14
34
1.91
10640--10728
31
2.9
31
80
11
103
40
8
7
42
1.65
11282--11329
22
2.1
23
85
11
64
54
4
6
35
1.45
16126--16258
60
2.2
59
80
7
144
36
9
12
41
1.76
17480--17565
35
2.5
35
84
0
100
40
20
1
37
1.61
17534--17576
21
2.0
21
100
0
86
46
13
0
39
1.44
17629--17660
16
2.0
16
93
0
55
46
0
3
50
1.17
17701--17734
16
2.0
18
88
11
54
26
2
5
64
1.30
18202--18449
130
1.9
130
94
0
433
36
12
14
35
1.85
21159--21220
13
4.5
14
74
21
51
51
12
1
33
1.50
21143--21254
42
2.7
42
81
12
124
50
14
4
30
1.62
22018--22048
16
1.9
16
93
0
53
16
9
6
67
1.39
26358--26424
33
2.1
31
91
5
107
46
10
17
25
1.80
28897--28924
2
14.0
2
100
0
56
50
0
0
50
1.00
29249--29463
111
1.9
112
85
0
297
34
15
20
29
1.94
31526--31761
102
2.3
103
84
2
305
41
10
18
28
1.84
33798--33859
26
2.5
24
82
15
72
8
16
0
75
1.02
33857--33904
17
2.9
15
84
12
51
12
14
2
70
1.25
33877--33909
17
1.9
17
100
0
66
9
18
0
72
1.10
33875--33930
28
1.9
30
89
7
89
7
17
0
75
1.03
33875--33934
11
5.9
11
72
27
53
6
18
0
75
1.02
33903--33963
12
4.8
12
77
15
50
3
19
0
77
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33914--33961
16
2.9
16
81
3
60
2
18
0
79
0.84
35400--35434
9
3.8
9
92
3
52
57
0
20
22
1.41
35396--35449
19
2.9
19
78
10
51
59
0
16
24
1.37
39475--39528
28
1.9
28
81
7
65
64
1
11
22
1.35
39925--39993
33
2.1
32
86
10
95
66
7
7
18
1.39
41293--41411
44
2.7
44
86
3
150
32
13
18
35
1.90
41524--41575
23
2.3
23
82
0
59
17
28
21
32
1.96
41578--41624
23
2.0
23
83
0
58
23
19
21
36
1.95
44604--44650
2
24.0
2
95
4
87
48
0
0
51
1.00

Tables:   1

The End!