genome.fa.s5066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005066.1 Hibiscus syriacus cultivar Beakdansim tig00011371_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87876

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18419--18465	20	2.3	21	82	10	62	36	23	14	25	1.93
18459--18526	20	3.4	20	79	0	82	42	26	13	17	1.86
18456--18546	40	2.2	41	86	1	130	46	23	13	17	1.83
18519--18567	21	2.4	21	96	3	91	42	18	20	18	1.89
18917--18968	21	2.5	21	90	6	79	19	17	17	46	1.85
18938--19050	21	5.5	20	83	5	118	19	19	15	46	1.85
18938--19039	41	2.5	41	82	4	107	19	19	14	46	1.84
21479--21519	21	2.0	21	85	4	57	36	12	12	39	1.80
23875--23910	2	18.0	2	94	0	63	50	2	0	47	1.15
29678--29753	20	3.7	20	77	16	75	27	18	22	31	1.97
33535--33574	21	1.9	21	90	10	64	37	10	0	52	1.35
40715--40752	16	2.2	18	90	9	62	39	18	5	36	1.73
49963--50048	36	2.4	36	90	1	138	38	10	16	34	1.83
51564--51592	15	1.9	15	100	0	58	55	3	0	41	1.17
53110--53361	36	7.0	36	89	1	364	30	23	26	18	1.98
55152--55197	24	1.9	24	95	0	83	36	13	8	41	1.75
57677--57711	15	2.2	16	95	5	63	20	20	20	40	1.92
59094--59149	2	28.0	2	100	0	112	50	0	0	50	1.00
61631--61672	22	2.0	21	86	13	59	28	0	7	64	1.20
67394--67420	2	13.5	2	100	0	54	51	0	0	48	1.00
75535--75600	33	2.0	33	96	0	123	42	16	15	25	1.87
75778--75821	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76998--77153	79	2.0	79	92	2	260	42	17	16	23	1.88
82150--82188	2	19.5	2	100	0	78	51	0	0	48	1.00

Tables:   1

The End!