Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005067.1 Hibiscus syriacus cultivar Beakdansim tig00011372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61337

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9587--9625
19
2.1
19
100
0
78
20
25
20
33
1.97
9578--9643
23
3.0
22
82
17
93
22
22
22
31
1.98
16803--16926
35
3.5
35
76
8
133
35
16
18
29
1.93
16803--16943
36
3.9
36
75
11
137
35
16
18
29
1.93
16803--16946
72
2.0
72
90
0
225
35
16
18
29
1.93
26044--26083
19
2.2
19
86
4
55
30
22
30
17
1.97
27914--27954
20
2.0
20
100
0
82
9
9
14
65
1.46
28021--28234
44
4.9
44
95
3
398
39
7
28
24
1.81
28021--28234
85
2.5
87
96
2
396
39
7
28
24
1.81
28555--28587
2
16.5
2
100
0
66
48
0
0
51
1.00
28958--29000
18
2.4
18
88
3
61
11
23
44
20
1.84
34909--35015
52
2.0
54
90
3
173
27
7
19
45
1.77
35930--36005
30
2.6
30
78
12
77
59
6
14
19
1.57
38232--38288
29
2.0
29
82
6
71
33
8
24
33
1.86
38293--38324
15
2.1
15
94
0
55
15
6
21
56
1.62
38745--38784
20
2.0
20
85
4
55
42
10
2
45
1.51
42238--42283
21
2.2
21
84
7
58
19
26
17
36
1.94
45536--45564
14
2.0
15
93
6
51
51
0
0
48
1.00
50788--50812
2
12.5
2
100
0
50
48
0
0
52
1.00
51345--51376
2
16.0
2
100
0
64
50
0
0
50
1.00
51470--51494
7
3.6
7
100
0
50
40
0
0
60
0.97
54434--54573
26
5.5
26
85
1
176
15
12
45
27
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54801--54847
14
3.2
16
80
19
59
55
0
0
44
0.99
54799--54845
12
3.8
12
81
15
51
55
0
0
44
0.99
54808--54854
11
4.4
11
82
10
53
59
0
0
40
0.97
54808--54854
17
2.9
16
84
12
60
59
0
0
40
0.97
55115--55936
115
7.2
115
88
2
1195
30
17
23
28
1.97
55115--55936
345
2.4
345
92
1
1355
30
17
23
28
1.97

Tables:   1

The End!