Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005068.1 Hibiscus syriacus cultivar Beakdansim tig00011373_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48941

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2715--2765
10
5.0
10
83
4
66
37
1
0
60
1.08
2684--2743
24
2.4
26
83
5
79
36
5
5
53
1.45
2700--2753
24
2.2
25
83
9
67
38
5
1
53
1.35
4273--4318
21
2.2
21
96
0
83
34
28
21
15
1.94
28115--28164
20
2.3
21
83
10
57
50
0
2
48
1.12
28128--28164
20
1.9
19
89
10
58
51
0
0
48
1.00
28121--28226
25
4.3
24
75
16
85
51
0
2
45
1.15
28462--28526
31
2.1
32
85
2
87
52
12
9
26
1.68
33412--33462
18
2.8
18
85
11
77
19
21
27
31
1.97
34270--34332
10
6.3
10
76
10
58
65
14
3
17
1.40
34270--34347
15
5.2
15
79
11
72
65
15
3
15
1.41
34319--34357
5
7.8
5
85
0
51
71
20
2
5
1.17
34305--34357
10
5.3
10
86
4
54
69
18
1
9
1.25
34319--34357
15
2.6
15
95
0
69
71
20
2
5
1.17
38506--38632
31
4.1
31
78
9
141
30
18
19
30
1.96
38620--38691
30
2.4
30
90
0
108
25
20
23
30
1.99
43312--43438
63
2.0
62
86
4
175
29
18
21
31
1.96
43315--43439
31
4.0
31
80
5
135
28
18
20
32
1.96
45260--45329
36
1.9
36
91
0
113
35
15
4
44
1.67
45259--45339
36
2.4
33
82
11
101
37
16
3
43
1.65
45317--45356
19
2.0
20
86
13
57
40
20
0
40
1.52
46948--46990
20
2.3
18
81
14
52
51
0
23
25
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47601--47675
25
3.0
25
98
1
143
46
0
8
45
1.32
48556--48586
15
2.1
15
93
0
53
54
0
0
45
0.99

Tables:   1

The End!