genome.fa.s5069.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005069.1 Hibiscus syriacus cultivar Beakdansim tig00011374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68446

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5665--5703	20	2.0	20	89	0	60	43	2	2	51	1.29
6172--6213	14	2.8	15	82	7	50	52	0	4	42	1.22
6190--6236	22	2.1	23	88	4	69	57	0	4	38	1.18
6169--6253	23	3.6	23	73	7	64	54	0	4	41	1.21
7975--8019	23	2.0	23	90	0	72	42	0	4	53	1.21
7976--8038	23	2.8	23	82	2	65	38	3	6	52	1.43
10105--10157	21	2.5	21	78	0	70	22	22	18	35	1.95
10147--10239	20	4.7	20	93	0	150	40	20	19	19	1.91
10436--10501	22	3.0	22	86	0	87	22	37	16	22	1.93
10852--10904	20	2.7	20	90	0	79	16	18	26	37	1.93
12229--12268	18	2.2	18	86	0	53	30	47	12	10	1.74
12797--12847	21	2.5	21	87	3	77	41	19	15	23	1.90
12797--12993	20	10.5	20	75	14	154	42	19	17	19	1.89
12832--12921	33	2.7	33	70	11	85	48	20	17	13	1.80
12888--12995	39	2.7	40	86	2	155	38	22	18	20	1.93
13040--13112	20	3.6	20	92	1	110	24	16	21	36	1.94
13083--13127	20	2.2	21	92	4	74	17	20	22	40	1.92
13608--13694	21	4.1	21	74	0	84	20	36	19	22	1.95
13616--13698	42	2.0	42	83	4	105	21	38	19	20	1.93
14952--14987	14	2.6	14	90	0	54	30	0	22	47	1.52
15093--15188	33	2.8	33	87	3	120	43	18	22	14	1.87
15203--15298	33	2.8	33	90	3	138	13	23	19	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15270--15344	20	3.8	20	90	0	114	18	20	25	36	1.95
15270--15378	40	2.9	39	79	11	122	20	21	23	34	1.96
15270--15355	20	4.3	20	85	2	93	18	20	24	36	1.95
17791--17844	24	2.2	24	93	0	90	40	20	18	20	1.91
18686--18752	20	3.3	20	82	0	89	23	16	25	34	1.95
18739--18911	20	8.6	20	93	0	283	21	19	18	40	1.91
18685--18812	40	3.2	40	82	8	120	23	17	21	36	1.95
18901--18950	21	2.4	21	93	0	82	36	16	24	24	1.94
24923--24966	14	3.1	14	86	3	61	59	9	2	29	1.41
26917--26974	22	2.6	22	97	0	107	24	5	36	34	1.78
31139--31178	20	2.0	20	85	9	55	0	12	2	85	0.71
31435--31499	22	3.0	22	93	0	103	24	4	35	35	1.76
37984--38018	17	2.1	17	88	0	52	2	0	45	51	1.16
38191--38844	140	4.7	140	86	1	848	27	20	17	33	1.95
52963--53350	68	5.7	68	85	2	501	32	13	22	31	1.92
52963--53350	136	2.9	136	88	0	569	32	13	22	31	1.92
52963--53350	204	1.9	204	86	2	555	32	13	22	31	1.92
53322--53601	81	3.5	81	88	1	391	36	11	23	28	1.90
53331--53649	162	2.0	162	82	5	394	36	11	23	28	1.90
58171--58425	68	3.8	68	91	0	429	31	15	23	29	1.95
58375--58595	81	2.7	80	87	1	298	34	13	23	28	1.92

Tables:   1

The End!