Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000507.1 Hibiscus syriacus cultivar Beakdansim tig00000964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59579

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6362--6837
215
2.2
216
89
2
699
32
17
17
32
1.93
6362--6861
54
9.3
54
84
3
598
32
17
17
32
1.93
9352--9845
4
124.8
4
97
2
953
24
0
25
50
1.50
15200--15249
3
16.3
3
95
4
91
66
0
0
34
0.92
17285--17326
18
2.3
19
83
4
59
45
14
0
40
1.45
17313--17362
25
2.0
26
84
4
66
40
8
0
52
1.31
17352--17459
30
3.7
29
79
6
101
40
9
2
47
1.50
17334--17487
30
5.3
29
73
9
100
37
9
1
51
1.45
17468--17516
22
2.2
22
77
0
53
48
2
2
46
1.25
17503--17834
30
11.5
28
73
10
118
52
0
8
38
1.37
17567--17858
30
9.8
29
78
9
257
52
1
8
38
1.39
17567--17834
149
1.8
148
82
6
346
52
0
8
38
1.36
18605--18707
50
2.0
53
86
5
149
38
2
3
54
1.34
20202--20230
2
14.5
2
100
0
58
51
0
0
48
1.00
20228--20258
3
10.3
3
100
0
62
67
0
0
32
0.91
21494--21546
20
2.5
21
82
11
56
47
26
1
24
1.62
23103--23153
15
3.5
14
76
7
57
43
13
9
33
1.77
23544--23591
13
3.7
13
78
10
62
47
12
4
35
1.60
23577--23676
33
3.0
33
92
2
157
45
15
7
33
1.73
23671--23710
21
1.9
21
94
0
71
47
7
15
30
1.72
25147--25331
92
2.0
92
100
0
370
27
20
18
34
1.95
25803--25848
12
3.6
12
81
16
56
17
19
17
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25802--25841
15
2.9
14
85
14
57
20
17
15
47
1.83
26163--26199
18
2.1
18
100
0
74
51
21
5
21
1.68
27553--27584
16
1.9
17
93
6
57
53
25
9
12
1.68
29593--29626
17
2.1
15
89
10
50
41
0
2
55
1.15
30455--30519
6
10.8
6
93
0
76
43
47
7
1
1.41
30456--30519
18
3.6
18
89
0
92
42
48
7
1
1.41
30492--30523
10
3.2
10
95
0
55
50
43
0
6
1.27
30517--31233
4
181.8
4
96
2
1292
50
25
0
23
1.51
31231--31486
12
21.3
12
97
0
377
39
49
11
0
1.39
31231--31486
18
14.2
18
97
0
377
39
49
11
0
1.39
31071--31489
12
34.9
12
95
0
262
43
41
6
7
1.60
32383--32421
16
2.4
16
95
0
69
35
12
12
38
1.82
33092--33155
24
2.7
24
92
0
101
32
18
7
40
1.80
34658--34688
4
7.8
4
100
0
62
77
22
0
0
0.77
34753--34839
33
2.5
35
85
10
117
47
8
1
43
1.40
34825--34892
2
35.5
2
84
8
79
51
0
1
47
1.09
34783--34875
32
2.8
32
82
12
107
49
4
2
44
1.34
34872--35082
39
5.5
39
86
4
293
45
7
1
45
1.43
34874--35089
114
1.9
113
90
1
344
46
7
1
43
1.43
41011--41173
65
2.5
64
85
3
229
27
15
26
30
1.96
41121--41157
19
1.9
19
94
0
65
24
16
37
21
1.93
41015--41215
65
3.1
64
80
14
225
27
17
24
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48592--48754
65
2.5
65
82
1
211
28
15
25
30
1.96
48702--48752
19
2.7
19
79
8
61
27
15
33
23
1.95

Tables:   1

The End!